Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JJB13_RS19765 Genome accession   NZ_CP067265
Coordinates   4087457..4088194 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ABW_S38     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4082457..4093194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB13_RS19735 (JJB13_19730) yfiL 4082615..4082980 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JJB13_RS19740 (JJB13_19735) aroF 4083190..4084260 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JJB13_RS19745 (JJB13_19740) tyrA 4084271..4085392 (+) 1122 WP_208771152.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JJB13_RS19750 (JJB13_19745) pheA 4085435..4086595 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JJB13_RS19755 (JJB13_19750) pheL 4086694..4086741 (-) 48 WP_010723158.1 phe operon leader peptide -
  JJB13_RS19760 (JJB13_19755) raiA 4086845..4087186 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JJB13_RS19765 (JJB13_19760) comL 4087457..4088194 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JJB13_RS19770 (JJB13_19765) rluD 4088329..4089309 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JJB13_RS19775 (JJB13_19770) yfiH 4089306..4090037 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  JJB13_RS19780 (JJB13_19775) clpC 4090167..4092740 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=457598 JJB13_RS19765 WP_000197686.1 4087457..4088194(-) (comL) [Escherichia coli strain ABW_S38]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=457598 JJB13_RS19765 WP_000197686.1 4087457..4088194(-) (comL) [Escherichia coli strain ABW_S38]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGACTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376