Detailed information NTG0457595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV187_RS22870
• Genome accession: NZ_CP055325
• Coordinates: 4778125..4778949 (+)
• Length: 274 a.a.
• NCBI ID: WP_177340578.1
• Uniprot ID: -
• Organism: Klebsiella michiganensis strain RHBSTW-00409
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4773125..4783949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV187_RS22835 (HV187_22845)	gspH	4773266..4773778 (+)	513	WP_177340572.1	type II secretion system minor pseudopilin GspH	-
HV187_RS22840 (HV187_22850)	gspI	4773775..4774140 (+)	366	WP_009654631.1	type II secretion system minor pseudopilin GspI	-
HV187_RS22845 (HV187_22855)	gspJ	4774137..4774733 (+)	597	WP_177340573.1	type II secretion system minor pseudopilin GspJ	-
HV187_RS22850 (HV187_22860)	gspK	4774730..4775710 (+)	981	WP_177340574.1	type II secretion system minor pseudopilin GspK	-
HV187_RS22855 (HV187_22865)	gspL	4775703..4776896 (+)	1194	WP_177340575.1	type II secretion system protein GspL	-
HV187_RS22860 (HV187_22870)	-	4776889..4777374 (+)	486	WP_177340576.1	type II secretion system protein M	-
HV187_RS22865 (HV187_22875)	-	4777364..4778122 (+)	759	WP_177340577.1	type II secretion system protein N	-
HV187_RS22870 (HV187_22880)	pilD	4778125..4778949 (+)	825	WP_177340578.1	A24 family peptidase	Machinery gene
HV187_RS22875 (HV187_22885)	hrpB	4779020..4781449 (-)	2430	WP_177340579.1	ATP-dependent helicase HrpB	-
HV187_RS22880 (HV187_22890)	thpR	4781522..4782058 (+)	537	WP_049073914.1	RNA 2',3'-cyclic phosphodiesterase	-
HV187_RS22885 (HV187_22895)	sfsA	4782058..4782774 (+)	717	WP_177340580.1	DNA/RNA nuclease SfsA	-
HV187_RS22890 (HV187_22900)	dksA	4782939..4783394 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 274 a.a.
• Molecular weight: 30098.91 Da
• Isoelectric Point: 8.1426

>NTDB_id=457595 HV187_RS22870 WP_177340578.1 4778125..4778949(+) (pilD) [Klebsiella michiganensis strain RHBSTW-00409]
MENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCREPIAWRDNIPLLSFLFL
KGRSRCCGQPISRRYPLMELATGALFMLVGYLIPPGIPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQVLNTLCSRCA

Nucleotide

• Length: 825 bp

>NTDB_id=457595 HV187_RS22870 WP_177340578.1 4778125..4778949(+) (pilD) [Klebsiella michiganensis strain RHBSTW-00409]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTGAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGTTTCCTGTTTCTT
AAGGGACGTTCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGATACCTGATACCTCCGGGCATACCGCTGCTGGGCGGGCTAATTTTCGTATCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCTGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCTTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATTAAA
CACCCTCTGCTCGCGCTGCGCTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.708	98.905	0.482
pilD	Neisseria gonorrhoeae MS11	44.964	100	0.456
pilD	Vibrio campbellii strain DS40M4	43.728	100	0.445
pilD	Acinetobacter nosocomialis M2	44.788	94.526	0.423
pilD	Acinetobacter baumannii D1279779	44.402	94.526	0.42