Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUK62_RS15995 Genome accession   NZ_CP055277
Coordinates   3284691..3285338 (+) Length   215 a.a.
NCBI ID   WP_176538336.1    Uniprot ID   A0A7H8SLF7
Organism   Acinetobacter sp. NEB 394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3279691..3290338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS15985 (HUK62_15985) - 3281810..3282625 (-) 816 WP_176538334.1 NAD-dependent epimerase/dehydratase family protein -
  HUK62_RS15990 (HUK62_15990) recG 3282659..3284704 (+) 2046 WP_176538335.1 ATP-dependent DNA helicase RecG -
  HUK62_RS15995 (HUK62_15995) comF 3284691..3285338 (+) 648 WP_176538336.1 phosphoribosyltransferase family protein Machinery gene
  HUK62_RS16000 (HUK62_16000) - 3285339..3285743 (-) 405 WP_176538337.1 NUDIX domain-containing protein -
  HUK62_RS16005 (HUK62_16005) - 3285740..3286339 (-) 600 WP_176538338.1 TIGR00730 family Rossman fold protein -
  HUK62_RS16010 (HUK62_16010) - 3286492..3287505 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  HUK62_RS16015 (HUK62_16015) - 3287587..3287874 (-) 288 WP_176538339.1 STAS domain-containing protein -
  HUK62_RS16020 (HUK62_16020) - 3287886..3288521 (-) 636 WP_004691364.1 ABC transporter substrate-binding protein -
  HUK62_RS16025 (HUK62_16025) - 3288542..3289216 (-) 675 WP_176538340.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HUK62_RS16030 (HUK62_16030) mlaE 3289216..3289995 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24987.19 Da        Isoelectric Point: 9.7762

>NTDB_id=457391 HUK62_RS15995 WP_176538336.1 3284691..3285338(+) (comF) [Acinetobacter sp. NEB 394]
MPMFSHLRHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRFPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKISAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=457391 HUK62_RS15995 WP_176538336.1 3284691..3285338(+) (comF) [Acinetobacter sp. NEB 394]
ATGCCTATGTTTAGTCATTTACGGCACACCGCCAAACAGTTGCTACACAAAGCTCAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCACTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTCGCAGGGCAGTATCAATATCCTTTAGACCATCTGATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCTGGCATTCTTCAGCAAATTCGCTTCCCTAAAGTGCAAGCAATTGTTCCAATGCCGATTTCGAG
CCAGCGTTTAGCCGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGCCAGTATGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAATCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SLF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.278

90.233

0.535
  comF Acinetobacter baumannii D1279779

59.278

90.233

0.535