Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HUK62_RS07915 Genome accession   NZ_CP055277
Coordinates   1665387..1665788 (+) Length   133 a.a.
NCBI ID   WP_176537561.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB 394     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660387..1670788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS07885 (HUK62_07885) kdsB 1661190..1661951 (+) 762 WP_176537556.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUK62_RS07890 (HUK62_07890) - 1661971..1662954 (+) 984 WP_176537557.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  HUK62_RS07895 (HUK62_07895) - 1662969..1663310 (+) 342 WP_176537558.1 PilZ domain-containing protein -
  HUK62_RS07900 (HUK62_07900) - 1663337..1664110 (+) 774 WP_176537559.1 TatD family hydrolase -
  HUK62_RS07905 (HUK62_07905) - 1664156..1664770 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  HUK62_RS07910 (HUK62_07910) - 1664783..1665352 (+) 570 WP_176537560.1 type II secretion system protein -
  HUK62_RS07915 (HUK62_07915) xcpV 1665387..1665788 (+) 402 WP_176537561.1 type II secretion system minor pseudopilin GspI Machinery gene
  HUK62_RS07920 (HUK62_07920) xcpW 1665785..1666405 (+) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HUK62_RS07925 (HUK62_07925) gspK 1666484..1667434 (+) 951 WP_176537562.1 type II secretion system minor pseudopilin GspK -
  HUK62_RS07930 (HUK62_07930) - 1667557..1668153 (+) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  HUK62_RS07935 (HUK62_07935) ung 1668195..1668908 (+) 714 WP_176537563.1 uracil-DNA glycosylase -
  HUK62_RS07940 (HUK62_07940) - 1668905..1670026 (+) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  HUK62_RS07945 (HUK62_07945) tadA 1670032..1670532 (+) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14699.84 Da        Isoelectric Point: 8.9672

>NTDB_id=457381 HUK62_RS07915 WP_176537561.1 1665387..1665788(+) (xcpV) [Acinetobacter sp. NEB 394]
MKYYFINPCSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSVVNPETGKVDSGVTSLVFFNHRDRSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=457381 HUK62_RS07915 WP_176537561.1 1665387..1665788(+) (xcpV) [Acinetobacter sp. NEB 394]
ATGAAATATTATTTCATTAATCCTTGCTCAGGATTTACATTGCTGGAAGTGATGGTAGCTCTGGCTATTTTTGCTACGGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCGT
GGTGAATCCTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATAGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.95

89.474

0.662