Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   HUK62_RS07920 Genome accession   NZ_CP055277
Coordinates   1665785..1666405 (+) Length   206 a.a.
NCBI ID   WP_004984837.1    Uniprot ID   A0A7H8SFP9
Organism   Acinetobacter sp. NEB 394     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660785..1671405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS07885 (HUK62_07885) kdsB 1661190..1661951 (+) 762 WP_176537556.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUK62_RS07890 (HUK62_07890) - 1661971..1662954 (+) 984 WP_176537557.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  HUK62_RS07895 (HUK62_07895) - 1662969..1663310 (+) 342 WP_176537558.1 PilZ domain-containing protein -
  HUK62_RS07900 (HUK62_07900) - 1663337..1664110 (+) 774 WP_176537559.1 TatD family hydrolase -
  HUK62_RS07905 (HUK62_07905) - 1664156..1664770 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  HUK62_RS07910 (HUK62_07910) - 1664783..1665352 (+) 570 WP_176537560.1 type II secretion system protein -
  HUK62_RS07915 (HUK62_07915) xcpV 1665387..1665788 (+) 402 WP_176537561.1 type II secretion system minor pseudopilin GspI Machinery gene
  HUK62_RS07920 (HUK62_07920) xcpW 1665785..1666405 (+) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HUK62_RS07925 (HUK62_07925) gspK 1666484..1667434 (+) 951 WP_176537562.1 type II secretion system minor pseudopilin GspK -
  HUK62_RS07930 (HUK62_07930) - 1667557..1668153 (+) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  HUK62_RS07935 (HUK62_07935) ung 1668195..1668908 (+) 714 WP_176537563.1 uracil-DNA glycosylase -
  HUK62_RS07940 (HUK62_07940) - 1668905..1670026 (+) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  HUK62_RS07945 (HUK62_07945) tadA 1670032..1670532 (+) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -
  HUK62_RS07950 (HUK62_07950) - 1670608..1671039 (+) 432 WP_176537564.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23563.11 Da        Isoelectric Point: 5.3491

>NTDB_id=457382 HUK62_RS07920 WP_004984837.1 1665785..1666405(+) (xcpW) [Acinetobacter sp. NEB 394]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=457382 HUK62_RS07920 WP_004984837.1 1665785..1666405(+) (xcpW) [Acinetobacter sp. NEB 394]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTATTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACAGGTAATGATCAAC
CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGCTACTCAATCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGGTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573