Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JJB20_RS16975 Genome accession   NZ_CP067232
Coordinates   3584499..3585155 (+) Length   218 a.a.
NCBI ID   WP_208769410.1    Uniprot ID   -
Organism   Escherichia coli strain SBF45     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3579499..3590155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB20_RS16945 (JJB20_16945) dcyD 3580379..3581365 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  JJB20_RS16950 (JJB20_16950) tcyL 3581380..3582048 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  JJB20_RS16955 (JJB20_16955) tcyN 3582045..3582797 (+) 753 WP_001273008.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JJB20_RS16960 (JJB20_16960) sdiA 3583027..3583749 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  JJB20_RS16965 (JJB20_16965) yecF 3583816..3584040 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  JJB20_RS16970 (JJB20_16970) yecU 3584027..3584203 (-) 177 WP_000590347.1 protein YecU -
  JJB20_RS23555 - 3584286..3584357 (-) 72 Protein_3329 transcriptional regulator -
  JJB20_RS16975 (JJB20_16975) letA 3584499..3585155 (+) 657 WP_208769410.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JJB20_RS16980 (JJB20_16980) uvrC 3585152..3586984 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JJB20_RS16985 (JJB20_16985) pgsA 3587041..3587589 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JJB20_RS17005 (JJB20_17005) yecA 3588239..3588904 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.70 Da        Isoelectric Point: 6.9614

>NTDB_id=457185 JJB20_RS16975 WP_208769410.1 3584499..3585155(+) (letA) [Escherichia coli strain SBF45]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMLGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=457185 JJB20_RS16975 WP_208769410.1 3584499..3585155(+) (letA) [Escherichia coli strain SBF45]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCTGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482