Detailed information NTG0456839

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUZ48_RS20530
• Genome accession: NZ_CP055213
• Coordinates: 4244942..4245742 (+)
• Length: 266 a.a.
• NCBI ID: WP_237902231.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain STEFF_21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4239942..4250742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ48_RS20495 (HUZ48_20430)	gspH	4240095..4240610 (+)	516	WP_121936392.1	type II secretion system minor pseudopilin GspH	-
HUZ48_RS20500 (HUZ48_20435)	gspI	4240607..4240972 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
HUZ48_RS20505 (HUZ48_20440)	gspJ	4240969..4241565 (+)	597	WP_023292022.1	type II secretion system minor pseudopilin GspJ	-
HUZ48_RS20510 (HUZ48_20445)	gspK	4241562..4242542 (+)	981	WP_077268850.1	type II secretion system minor pseudopilin GspK	-
HUZ48_RS20515 (HUZ48_20450)	gspL	4242535..4243731 (+)	1197	WP_236947992.1	type II secretion system protein GspL	-
HUZ48_RS20520 (HUZ48_20455)	-	4243724..4244209 (+)	486	WP_023292019.1	type II secretion system protein M	-
HUZ48_RS20525 (HUZ48_20460)	-	4244199..4244927 (+)	729	WP_023292018.1	type II secretion system protein N	-
HUZ48_RS20530 (HUZ48_20465)	pilD	4244942..4245742 (+)	801	WP_237902231.1	A24 family peptidase	Machinery gene
HUZ48_RS20535 (HUZ48_20470)	hrpB	4245790..4248219 (-)	2430	WP_237902232.1	ATP-dependent helicase HrpB	-
HUZ48_RS20540 (HUZ48_20475)	thpR	4248292..4248828 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
HUZ48_RS20545 (HUZ48_20480)	sfsA	4248828..4249544 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
HUZ48_RS20550 (HUZ48_20485)	dksA	4249707..4250162 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29320.91 Da
• Isoelectric Point: 8.7151

>NTDB_id=456839 HUZ48_RS20530 WP_237902231.1 4244942..4245742(+) (pilD) [Klebsiella quasipneumoniae strain STEFF_21]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGCVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=456839 HUZ48_RS20530 WP_237902231.1 4244942..4245742(+) (pilD) [Klebsiella quasipneumoniae strain STEFF_21]
ATGACGACATTAGCCGCTTTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGTATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCTAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGTGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425