Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   JCR30_RS07615 Genome accession   NZ_CP067008
Coordinates   1480155..1481189 (-) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain iGAS426     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1475155..1486189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR30_RS07580 (JCR30_07580) - 1475931..1476233 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  JCR30_RS07585 (JCR30_07585) - 1476226..1476522 (-) 297 WP_002983486.1 YlxR family protein -
  JCR30_RS07590 (JCR30_07590) nusA 1476538..1477695 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  JCR30_RS07595 (JCR30_07595) rimP 1477870..1478406 (-) 537 WP_011888645.1 ribosome maturation factor RimP -
  JCR30_RS07605 (JCR30_07605) trmB 1478665..1479300 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JCR30_RS07610 (JCR30_07610) - 1479300..1480091 (-) 792 WP_002983385.1 phosphotransferase family protein -
  JCR30_RS07615 (JCR30_07615) pptB 1480155..1481189 (-) 1035 WP_002994331.1 ABC transporter permease Regulator
  JCR30_RS07620 (JCR30_07620) pptA 1481192..1481917 (-) 726 WP_011888644.1 ABC transporter ATP-binding protein Regulator
  JCR30_RS07625 (JCR30_07625) - 1481989..1482408 (+) 420 WP_002983376.1 HIT family protein -
  JCR30_RS07630 (JCR30_07630) - 1482405..1482761 (+) 357 WP_011888643.1 hypothetical protein -
  JCR30_RS07635 (JCR30_07635) - 1482872..1484155 (-) 1284 WP_002983372.1 LCP family protein -
  JCR30_RS07640 (JCR30_07640) - 1484164..1484688 (-) 525 WP_011888642.1 N-acetyltransferase -
  JCR30_RS07645 (JCR30_07645) tsaE 1484663..1485124 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=456809 JCR30_RS07615 WP_002994331.1 1480155..1481189(-) (pptB) [Streptococcus pyogenes strain iGAS426]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=456809 JCR30_RS07615 WP_002994331.1 1480155..1481189(-) (pptB) [Streptococcus pyogenes strain iGAS426]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427