Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   APECO78_RS17420 Genome accession   NC_020163
Coordinates   3480680..3481417 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli APEC O78     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475680..3486417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO78_RS17405 (APECO78_16690) clpC 3476134..3478707 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  APECO78_RS17410 (APECO78_16695) yfiH 3478837..3479568 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  APECO78_RS17415 (APECO78_16700) rluD 3479565..3480545 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  APECO78_RS17420 (APECO78_16705) comL 3480680..3481417 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  APECO78_RS17430 (APECO78_16710) raiA 3481688..3482029 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  APECO78_RS26815 pheL 3482133..3482180 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  APECO78_RS17435 (APECO78_16715) pheA 3482279..3483439 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  APECO78_RS17440 (APECO78_16720) tyrA 3483482..3484603 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  APECO78_RS17445 (APECO78_16725) aroF 3484614..3485684 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  APECO78_RS17450 (APECO78_16730) yfiL 3485894..3486259 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=45671 APECO78_RS17420 WP_000197686.1 3480680..3481417(+) (comL) [Escherichia coli APEC O78]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=45671 APECO78_RS17420 WP_000197686.1 3480680..3481417(+) (comL) [Escherichia coli APEC O78]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment