Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HUZ45_RS05535 | Genome accession | NZ_CP055181 |
| Coordinates | 1126282..1127343 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Shigella flexneri strain STEFF_17 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1119272..1166593 | 1126282..1127343 | within | 0 |
Gene organization within MGE regions
Location: 1119272..1166593
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ45_RS05490 (HUZ45_05455) | gutQ | 1119272..1120237 (-) | 966 | WP_191115611.1 | arabinose-5-phosphate isomerase GutQ | - |
| HUZ45_RS05495 (HUZ45_05460) | srlR | 1120230..1121003 (-) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| HUZ45_RS05500 (HUZ45_05465) | gutM | 1121070..1121429 (-) | 360 | WP_122056860.1 | transcriptional regulator GutM | - |
| HUZ45_RS05505 (HUZ45_05470) | srlD | 1121535..1122314 (-) | 780 | WP_096178035.1 | sorbitol-6-phosphate dehydrogenase | - |
| HUZ45_RS05510 (HUZ45_05475) | srlB | 1122318..1122689 (-) | 372 | WP_000216201.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| HUZ45_RS05515 (HUZ45_05480) | srlE | 1122700..1123659 (-) | 960 | WP_023281438.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| HUZ45_RS05520 (HUZ45_05485) | srlA | 1123656..1124219 (-) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| HUZ45_RS05525 (HUZ45_05490) | mltB | 1124475..1125560 (+) | 1086 | WP_000476837.1 | lytic murein transglycosylase B | - |
| HUZ45_RS05530 (HUZ45_05495) | pncC | 1125705..1126202 (+) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| HUZ45_RS05535 (HUZ45_05500) | recA | 1126282..1127343 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| HUZ45_RS05540 (HUZ45_05505) | recX | 1127412..1127912 (+) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| HUZ45_RS05545 (HUZ45_05510) | alaS | 1128040..1130670 (+) | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| HUZ45_RS05550 (HUZ45_05515) | csrA | 1130905..1131090 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| HUZ45_RS05580 (HUZ45_05545) | yqaB | 1132547..1133113 (+) | 567 | WP_122056861.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| HUZ45_RS05585 (HUZ45_05550) | - | 1133110..1133538 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| HUZ45_RS05590 (HUZ45_05555) | gshA | 1133611..1135167 (+) | 1557 | WP_023281437.1 | glutamate--cysteine ligase | - |
| HUZ45_RS05595 (HUZ45_05560) | luxS | 1135317..1135832 (+) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | - |
| HUZ45_RS05600 (HUZ45_05565) | emrB | 1135896..1137434 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| HUZ45_RS05605 (HUZ45_05570) | emrA | 1137451..1138623 (-) | 1173 | WP_239638159.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| HUZ45_RS05610 (HUZ45_05575) | emrR | 1138750..1139280 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| HUZ45_RS05615 (HUZ45_05580) | ygaH | 1139371..1139706 (-) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| HUZ45_RS05620 (HUZ45_05585) | ygaZ | 1139696..1140433 (-) | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| HUZ45_RS05625 (HUZ45_05590) | - | 1140557..1141741 (-) | 1185 | WP_000165680.1 | MFS transporter | - |
| HUZ45_RS05630 (HUZ45_05595) | proX | 1142033..1143025 (-) | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| HUZ45_RS05635 (HUZ45_05600) | proW | 1143083..1144147 (-) | 1065 | WP_096178036.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| HUZ45_RS05640 (HUZ45_05605) | proV | 1144140..1145342 (-) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| HUZ45_RS05645 (HUZ45_05610) | nrdF | 1145696..1146655 (-) | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| HUZ45_RS05650 (HUZ45_05615) | nrdE | 1146665..1148809 (-) | 2145 | WP_239638160.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| HUZ45_RS05655 (HUZ45_05620) | nrdI | 1148782..1149192 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| HUZ45_RS05660 (HUZ45_05625) | nrdH | 1149189..1149434 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| HUZ45_RS05665 (HUZ45_05630) | - | 1149682..1150011 (-) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| HUZ45_RS05670 (HUZ45_05635) | - | 1150163..1150507 (+) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| HUZ45_RS05675 (HUZ45_05640) | alaE | 1150544..1150993 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| HUZ45_RS05680 (HUZ45_05645) | stpA | 1151661..1152065 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| HUZ45_RS05685 (HUZ45_05650) | ygaP | 1152112..1152636 (-) | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| HUZ45_RS05690 (HUZ45_05655) | - | 1152646..1152945 (-) | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HUZ45_RS05695 (HUZ45_05660) | - | 1153128..1153286 (+) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| HUZ45_RS05700 (HUZ45_05665) | kbp | 1153370..1153819 (+) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| HUZ45_RS05705 (HUZ45_05670) | csiR | 1153820..1154482 (-) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| HUZ45_RS05710 (HUZ45_05675) | gabP | 1154503..1155903 (-) | 1401 | WP_096178038.1 | GABA permease | - |
| HUZ45_RS05715 (HUZ45_05680) | gabT | 1156141..1157421 (-) | 1281 | WP_000097662.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| HUZ45_RS05720 (HUZ45_05685) | gabD | 1157435..1158883 (-) | 1449 | WP_000772820.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| HUZ45_RS05725 (HUZ45_05690) | lhgO | 1158906..1160174 (-) | 1269 | WP_000271962.1 | L-2-hydroxyglutarate oxidase | - |
| HUZ45_RS05730 (HUZ45_05695) | glaH | 1160193..1161170 (-) | 978 | WP_000993087.1 | glutarate dioxygenase GlaH | - |
| HUZ45_RS05735 (HUZ45_05700) | - | 1161506..1163758 (-) | 2253 | Protein_1129 | alpha-amylase family glycosyl hydrolase | - |
| HUZ45_RS05745 (HUZ45_05710) | - | 1165144..1165323 (+) | 180 | WP_156262394.1 | DUF5507 domain-containing protein | - |
| HUZ45_RS05750 (HUZ45_05715) | - | 1165365..1166593 (+) | 1229 | WP_089541817.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=456694 HUZ45_RS05535 WP_000963143.1 1126282..1127343(+) (recA) [Shigella flexneri strain STEFF_17]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=456694 HUZ45_RS05535 WP_000963143.1 1126282..1127343(+) (recA) [Shigella flexneri strain STEFF_17]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.