Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JHL13_RS09505 Genome accession   NZ_CP066844
Coordinates   1989409..1990065 (+) Length   218 a.a.
NCBI ID   WP_226153457.1    Uniprot ID   -
Organism   Escherichia coli strain Z30     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984409..1995065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHL13_RS09475 (JHL13_09420) dcyD 1985289..1986275 (+) 987 WP_001128235.1 D-cysteine desulfhydrase -
  JHL13_RS09480 (JHL13_09425) tcyL 1986290..1986958 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  JHL13_RS09485 (JHL13_09430) tcyN 1986955..1987707 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JHL13_RS09490 (JHL13_09435) sdiA 1987937..1988659 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  JHL13_RS09495 (JHL13_09440) yecF 1988726..1988950 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  JHL13_RS09500 (JHL13_09445) yecU 1988937..1989113 (-) 177 WP_001307856.1 protein YecU -
  JHL13_RS09505 (JHL13_09450) letA 1989409..1990065 (+) 657 WP_226153457.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JHL13_RS09510 (JHL13_09455) uvrC 1990062..1991894 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JHL13_RS09515 (JHL13_09460) pgsA 1991951..1992499 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JHL13_RS09535 (JHL13_09480) - 1993197..1993838 (-) 642 Protein_1869 hypothetical protein -
  JHL13_RS09540 (JHL13_09485) - 1993911..1994999 (+) 1089 Protein_1870 IS3 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23896.64 Da        Isoelectric Point: 6.9614

>NTDB_id=456694 JHL13_RS09505 WP_226153457.1 1989409..1990065(+) (letA) [Escherichia coli strain Z30]
MINVLFVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=456694 JHL13_RS09505 WP_226153457.1 1989409..1990065(+) (letA) [Escherichia coli strain Z30]
TTGATCAACGTTCTATTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACTGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482