Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JEK78_RS09105 Genome accession   NZ_CP066801
Coordinates   2209463..2210872 (+) Length   469 a.a.
NCBI ID   WP_200263590.1    Uniprot ID   -
Organism   Streptomyces sp. HSG2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204463..2215872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEK78_RS09085 - 2204611..2205438 (-) 828 WP_200263588.1 sugar phosphate isomerase/epimerase -
  JEK78_RS09090 - 2205569..2206501 (-) 933 WP_200263589.1 Ppx/GppA phosphatase family protein -
  JEK78_RS09095 - 2206760..2207524 (+) 765 Protein_1800 hypothetical protein -
  JEK78_RS09100 - 2207521..2209233 (-) 1713 WP_242483316.1 hypothetical protein -
  JEK78_RS09105 radA 2209463..2210872 (+) 1410 WP_200263590.1 DNA repair protein RadA Machinery gene
  JEK78_RS09110 disA 2210950..2212074 (+) 1125 WP_200263591.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  JEK78_RS09115 - 2212174..2212968 (-) 795 WP_200263592.1 hypothetical protein -
  JEK78_RS09120 - 2213335..2214312 (+) 978 WP_200263593.1 A/G-specific adenine glycosylase -
  JEK78_RS09125 - 2214506..2215045 (+) 540 WP_200263594.1 SigE family RNA polymerase sigma factor -
  JEK78_RS09130 - 2215093..2215704 (+) 612 WP_200264065.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49581.66 Da        Isoelectric Point: 7.4359

>NTDB_id=456375 JEK78_RS09105 WP_200263590.1 2209463..2210872(+) (radA) [Streptomyces sp. HSG2]
MAARAKTTKDRPSYRCTECGRQTPKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTAALPIGQVDGRQAAARSTGVPEL
DRVLGGGLVPGAVALLAGEPGVGKSTLLLDAAAKSAGPEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDEVKPSLLVLDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRREDPVPGTCLTVTLEGRRPLVAEVQALTVESQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAVALALASAASDTPLPKNLVAVGEVGL
AGEVRRVTGVQRRLAEAGRLGFTHALVPGDPGRVPPGMRVLEVADIGDALRVLPLSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=456375 JEK78_RS09105 WP_200263590.1 2209463..2210872(+) (radA) [Streptomyces sp. HSG2]
ATGGCTGCCCGCGCGAAGACCACCAAGGACCGGCCCTCCTACCGCTGCACGGAGTGCGGTCGGCAGACGCCCAAGTGGCT
CGGCCGATGCCCGGAATGCCAGGCCTGGGGCACCGTGGAGGAGTACGGCACGCCCGCCGTCCGGACCACGGCTCCGGGGA
GGGTCACCACGGCCGCACTGCCGATCGGCCAGGTCGACGGCCGACAGGCCGCCGCCCGCTCCACCGGCGTGCCGGAGTTG
GACCGTGTCCTAGGTGGCGGCCTGGTGCCCGGCGCGGTGGCCCTCCTCGCCGGGGAGCCCGGCGTGGGGAAGTCCACCCT
GCTGCTCGACGCGGCGGCCAAGTCGGCCGGGCCGGAGCACCGCACGCTCTACGTCACGGGCGAGGAGAGCGCGAGCCAGG
TCCGGCTGCGGGCCGACCGGATCGGCGCCATCGACGACCACCTCTATCTCGCCGCCGAGACCGACCTGGCGGCGGTGCTC
GGCCACCTCGACGAGGTGAAGCCGTCCCTCCTGGTCCTGGACTCGGTGCAGACGATCGCCTCGCCGGAGATCGACGGCGC
GCCGGGGGGCATGGCACAGGTACGGGAGGTGGCGGGGGCTCTGATCCGGGCGTCGAAGGAGCGTGGCATGTCGACGCTGT
TGGTCGGCCACGTGACCAAGGACGGCGCGATCGCCGGGCCCCGGTTGCTGGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGTCACGCCCGCCTGCGTCTGGTGCGCGGTGTGAAGAACCGGTACGGCGCCACCGACGAGGTCGGCTGTTT
CGAGTTGCACGACGAGGGAATCACGGGTCTGGCCGACCCCAGCGGGCTCTTCCTGACCCGTCGGGAGGACCCCGTGCCCG
GCACCTGCCTGACCGTGACCCTGGAGGGCCGCCGACCTCTGGTGGCGGAGGTGCAGGCGCTGACCGTCGAGTCGCAGATC
CCCTCTCCCCGGCGCACCACCTCCGGTCTGGAGACGTCCCGCGTCTCCATGATGCTGGCGGTCCTGGAGCAGAGGGGGCG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGCGGTTGTCCGAGCCCGCCGCCGATCTGG
CCGTCGCCCTCGCCCTCGCCAGCGCGGCGTCGGACACCCCGCTGCCGAAGAACCTCGTCGCCGTCGGAGAGGTGGGGCTG
GCCGGCGAGGTGCGACGGGTGACGGGGGTGCAGCGGCGGCTCGCGGAGGCGGGCCGACTGGGCTTCACCCACGCCCTGGT
TCCCGGGGACCCCGGCAGGGTCCCGCCCGGGATGCGGGTGCTGGAGGTCGCCGACATCGGGGACGCGCTGCGCGTGCTCC
CCCTCTCTCGTCGCCGAGAGGCCCCGCGAGAGGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.653

95.736

0.418
  radA Streptococcus mitis SK321

43.653

95.736

0.418
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414