Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JG533_RS05985 Genome accession   NZ_CP066759
Coordinates   1212661..1213398 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157:H7 strain ECP19-198     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207661..1218398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG533_RS05955 (JG533_05955) yfiL 1207819..1208184 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  JG533_RS05960 (JG533_05960) aroF 1208394..1209464 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JG533_RS05965 (JG533_05965) tyrA 1209475..1210596 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JG533_RS05970 (JG533_05970) pheA 1210639..1211799 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JG533_RS05975 (JG533_05975) pheL 1211898..1211945 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JG533_RS05980 (JG533_05980) raiA 1212049..1212390 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JG533_RS05985 (JG533_05985) comL 1212661..1213398 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JG533_RS05990 (JG533_05990) rluD 1213533..1214513 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JG533_RS05995 (JG533_05995) yfiH 1214510..1215241 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  JG533_RS06000 (JG533_06000) clpC 1215371..1217944 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=456295 JG533_RS05985 WP_000197686.1 1212661..1213398(-) (comL) [Escherichia coli O157:H7 strain ECP19-198]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=456295 JG533_RS05985 WP_000197686.1 1212661..1213398(-) (comL) [Escherichia coli O157:H7 strain ECP19-198]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376