Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JG534_RS06190 Genome accession   NZ_CP066745
Coordinates   1194447..1195313 (-) Length   288 a.a.
NCBI ID   WP_002868569.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189447..1200313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS06170 (JG534_06170) metF 1191300..1192148 (+) 849 WP_002868571.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  JG534_RS06175 (JG534_06175) - 1192170..1192361 (-) 192 WP_002852856.1 membrane protein -
  JG534_RS06180 (JG534_06180) atpB 1192358..1193038 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  JG534_RS06185 (JG534_06185) radA/sms 1193107..1194447 (-) 1341 WP_002868570.1 DNA repair protein RadA Machinery gene
  JG534_RS06190 (JG534_06190) pilA 1194447..1195313 (-) 867 WP_002868569.1 signal recognition particle-docking protein FtsY Machinery gene
  JG534_RS06195 (JG534_06195) - 1195313..1195870 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  JG534_RS06200 (JG534_06200) - 1195953..1196579 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  JG534_RS06205 (JG534_06205) rny 1196500..1198053 (+) 1554 WP_002867373.1 ribonuclease Y -
  JG534_RS06210 (JG534_06210) - 1198062..1198619 (+) 558 WP_002856055.1 DedA family protein -
  JG534_RS06215 (JG534_06215) - 1198619..1199879 (+) 1261 Protein_1211 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32048.05 Da        Isoelectric Point: 5.8617

>NTDB_id=455969 JG534_RS06190 WP_002868569.1 1194447..1195313(-) (pilA) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLNTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=455969 JG534_RS06190 WP_002868569.1 1194447..1195313(-) (pilA) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTAGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAAATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434