Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JG534_RS06185 Genome accession   NZ_CP066745
Coordinates   1193107..1194447 (-) Length   446 a.a.
NCBI ID   WP_002868570.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188107..1199447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS06160 (JG534_06160) - 1188244..1189014 (+) 771 WP_002868573.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  JG534_RS06165 (JG534_06165) metE 1189026..1191290 (+) 2265 WP_002868572.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  JG534_RS06170 (JG534_06170) metF 1191300..1192148 (+) 849 WP_002868571.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  JG534_RS06175 (JG534_06175) - 1192170..1192361 (-) 192 WP_002852856.1 membrane protein -
  JG534_RS06180 (JG534_06180) atpB 1192358..1193038 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  JG534_RS06185 (JG534_06185) radA/sms 1193107..1194447 (-) 1341 WP_002868570.1 DNA repair protein RadA Machinery gene
  JG534_RS06190 (JG534_06190) pilA 1194447..1195313 (-) 867 WP_002868569.1 signal recognition particle-docking protein FtsY Machinery gene
  JG534_RS06195 (JG534_06195) - 1195313..1195870 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  JG534_RS06200 (JG534_06200) - 1195953..1196579 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  JG534_RS06205 (JG534_06205) rny 1196500..1198053 (+) 1554 WP_002867373.1 ribonuclease Y -
  JG534_RS06210 (JG534_06210) - 1198062..1198619 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48966.88 Da        Isoelectric Point: 7.2436

>NTDB_id=455968 JG534_RS06185 WP_002868570.1 1193107..1194447(-) (radA/sms) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLGIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=455968 JG534_RS06185 WP_002868570.1 1193107..1194447(-) (radA/sms) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCCTGTGGAAATCAACAAAGTAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCACAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGTGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTAAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGGAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTATTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCCAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.356

97.534

0.462
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457