Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I5P57_RS05945 Genome accession   NZ_CP066740
Coordinates   1203718..1204455 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain R12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198718..1209455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P57_RS05915 (I5P57_01164) yfiL 1198876..1199241 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  I5P57_RS05920 (I5P57_01165) aroF 1199452..1200522 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I5P57_RS05925 (I5P57_01166) tyrA 1200533..1201654 (+) 1122 WP_000225219.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I5P57_RS05930 (I5P57_01167) pheA 1201697..1202857 (-) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  I5P57_RS05935 pheL 1202956..1203003 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I5P57_RS05940 (I5P57_01168) raiA 1203107..1203448 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I5P57_RS05945 (I5P57_01169) comL 1203718..1204455 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I5P57_RS05950 (I5P57_01170) rluD 1204590..1205570 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I5P57_RS05955 (I5P57_01171) yfiH 1205567..1206298 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  I5P57_RS05960 (I5P57_01172) clpC 1206428..1209001 (+) 2574 WP_001314061.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=455798 I5P57_RS05945 WP_000197686.1 1203718..1204455(-) (comL) [Escherichia coli strain R12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=455798 I5P57_RS05945 WP_000197686.1 1203718..1204455(-) (comL) [Escherichia coli strain R12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376