Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JFJ84_RS06750 Genome accession   NZ_CP066739
Coordinates   1415713..1416498 (+) Length   261 a.a.
NCBI ID   WP_012340257.1    Uniprot ID   A0A9Q7E7G6
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410713..1421498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS06740 (JFJ84_06735) - 1412143..1412988 (-) 846 WP_012340259.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  JFJ84_RS06745 (JFJ84_06740) - 1413048..1415588 (-) 2541 WP_012340258.1 penicillin-binding protein 1A -
  JFJ84_RS06750 (JFJ84_06745) comA 1415713..1416498 (+) 786 WP_012340257.1 hypothetical protein Machinery gene
  JFJ84_RS06755 (JFJ84_06750) - 1416502..1417041 (+) 540 WP_012340256.1 PilN domain-containing protein -
  JFJ84_RS06760 (JFJ84_06755) - 1417045..1417542 (+) 498 WP_011609266.1 hypothetical protein -
  JFJ84_RS06765 (JFJ84_06760) comE 1417558..1418691 (+) 1134 WP_012340255.1 type IV pilus secretin PilQ Machinery gene
  JFJ84_RS06770 (JFJ84_06765) aroK 1418873..1419400 (+) 528 WP_012340254.1 shikimate kinase AroK -
  JFJ84_RS06775 (JFJ84_06770) aroB 1419420..1420508 (+) 1089 WP_012340253.1 3-dehydroquinate synthase -
  JFJ84_RS06780 (JFJ84_06775) - 1420515..1421378 (+) 864 WP_012340252.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 31292.78 Da        Isoelectric Point: 7.1316

>NTDB_id=455755 JFJ84_RS06750 WP_012340257.1 1415713..1416498(+) (comA) [Histophilus somni strain ASc-MMNZ-VFA-069]
MRPNKKTANILQIGIHRQDEQWQFLWFDEQKQPHFLTKNDNPPLKLSDLTPQFAKNICTWIACLPNQHVWVKTIILTQKL
NEQECQQQCNLIIENELPTDFDDIWYDYQYKELTQGAKLAIYVVRKQTAQNYVHRFFPIKINTLDCLSNSLLRAFHYFHP
QKEKMETLYLYQDRNGCIAIQEIGQQTIVLQKNDKNITALYQEFCQRFNCQPQHVWCYCEKNEQQNITHKWNIINTELPF
IALGNALWGRHELYQITELKE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=455755 JFJ84_RS06750 WP_012340257.1 1415713..1416498(+) (comA) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGAGACCTAACAAAAAAACAGCAAATATTTTACAAATTGGTATTCATAGACAAGATGAACAATGGCAATTCCTCTGGTT
TGATGAACAAAAACAACCGCACTTTTTAACTAAAAACGATAATCCCCCTCTTAAACTATCTGATTTGACACCACAATTCG
CAAAGAATATCTGCACATGGATAGCCTGTTTACCCAATCAGCACGTCTGGGTAAAAACAATCATATTGACGCAAAAGTTA
AATGAGCAAGAATGCCAACAACAATGTAACTTAATCATAGAAAATGAATTGCCGACAGATTTCGATGATATTTGGTACGA
CTACCAATATAAAGAATTAACACAAGGTGCAAAACTGGCTATCTACGTTGTTAGAAAACAAACAGCTCAAAATTATGTGC
ATCGTTTTTTCCCTATAAAAATTAATACATTAGATTGCTTAAGTAATAGCCTACTACGAGCATTCCATTATTTTCACCCC
CAAAAAGAAAAGATGGAAACATTATATTTATATCAGGATCGTAACGGCTGTATAGCAATACAAGAAATCGGACAACAAAC
AATCGTTCTACAAAAAAATGACAAAAATATTACCGCACTTTATCAAGAATTCTGCCAACGTTTTAACTGCCAACCTCAAC
ACGTTTGGTGCTATTGTGAAAAAAATGAACAACAAAATATCACTCATAAATGGAACATCATTAATACCGAATTGCCTTTT
ATTGCTTTAGGAAATGCTCTTTGGGGAAGACATGAACTCTATCAAATAACGGAATTAAAGGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E7G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.467

98.467

0.398
  comA Haemophilus influenzae Rd KW20

39.3

98.467

0.387