Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JFL60_RS07565 Genome accession   NZ_CP066567
Coordinates   1564659..1565366 (-) Length   235 a.a.
NCBI ID   WP_011608614.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-079     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559659..1570366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL60_RS07535 (JFL60_07535) sodA 1559970..1560599 (+) 630 WP_132994691.1 superoxide dismutase [Mn] -
  JFL60_RS07540 (JFL60_07540) hpt 1560728..1561267 (-) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  JFL60_RS07545 (JFL60_07545) raiA 1561471..1561788 (-) 318 WP_132994692.1 ribosome-associated translation inhibitor RaiA -
  JFL60_RS07550 (JFL60_07550) - 1562024..1563400 (-) 1377 WP_132994693.1 alanine/glycine:cation symporter family protein -
  JFL60_RS07555 (JFL60_07555) yacG 1563801..1563995 (-) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  JFL60_RS07560 (JFL60_07560) coaE 1563992..1564639 (-) 648 WP_011608615.1 dephospho-CoA kinase -
  JFL60_RS07565 (JFL60_07565) pilD 1564659..1565366 (-) 708 WP_011608614.1 prepilin peptidase Machinery gene
  JFL60_RS07570 (JFL60_07570) pilC 1565363..1566583 (-) 1221 WP_011608613.1 type II secretion system F family protein Machinery gene
  JFL60_RS07590 (JFL60_07590) gltX 1567272..1568714 (+) 1443 WP_132994694.1 glutamate--tRNA ligase -
  JFL60_RS07600 (JFL60_07600) - 1569053..1569787 (-) 735 WP_132994695.1 4'-phosphopantetheinyl transferase family protein -
  JFL60_RS07605 (JFL60_07605) - 1569817..1570059 (-) 243 WP_132994696.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27007.51 Da        Isoelectric Point: 8.1958

>NTDB_id=455706 JFL60_RS07565 WP_011608614.1 1564659..1565366(-) (pilD) [Histophilus somni strain ASc-MMNZ-VFA-079]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLIGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=455706 JFL60_RS07565 WP_011608614.1 1564659..1565366(-) (pilD) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGATTTATCTAGCTTATATGTTGTTTGGTGGACTTTGTGGGTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCGGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAATTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGTGATTACTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CGTTCTTATGTCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTCCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362