Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JFL60_RS06380 Genome accession   NZ_CP066567
Coordinates   1312351..1313136 (+) Length   261 a.a.
NCBI ID   WP_132994605.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-079     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307351..1318136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL60_RS06370 (JFL60_06370) - 1308781..1309626 (-) 846 WP_132994607.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  JFL60_RS06375 (JFL60_06375) - 1309686..1312226 (-) 2541 WP_132994606.1 penicillin-binding protein 1A -
  JFL60_RS06380 (JFL60_06380) comA 1312351..1313136 (+) 786 WP_132994605.1 competence protein ComA Machinery gene
  JFL60_RS06385 (JFL60_06385) - 1313140..1313679 (+) 540 WP_132994604.1 PilN domain-containing protein -
  JFL60_RS06390 (JFL60_06390) - 1313683..1314180 (+) 498 WP_132994603.1 competence protein -
  JFL60_RS06395 (JFL60_06395) comE 1314196..1315329 (+) 1134 WP_132994602.1 type IV pilus secretin PilQ Machinery gene
  JFL60_RS06400 (JFL60_06400) aroK 1315511..1316038 (+) 528 WP_012340254.1 shikimate kinase AroK -
  JFL60_RS06405 (JFL60_06405) aroB 1316058..1317146 (+) 1089 WP_132994601.1 3-dehydroquinate synthase -
  JFL60_RS06410 (JFL60_06410) - 1317153..1318016 (+) 864 WP_132994600.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 31171.68 Da        Isoelectric Point: 7.2918

>NTDB_id=455700 JFL60_RS06380 WP_132994605.1 1312351..1313136(+) (comA) [Histophilus somni strain ASc-MMNZ-VFA-079]
MRPNKKTANILQIGIHRQDEQWQFLWFDEQKQPHFLTKNDNPPLKLSDLTPQFAKNICTWIACLPNQHVWVKTIILTQKL
NEQECQQQCNLIIENELPTDFGDIWYDYQYKELTQGAKLAIYVVRKQTAQNYVHRFFPIKINTLDCLSNSLLRAFHYFHP
PKEKMETLYLYQDRNGCIAIQEIGQQTIVLQKNDKNITALYQEFCQRFNCQPQQVWCYCEKNEQQNITHKWNIINTELPF
IALGNALWGRNELYQITELKE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=455700 JFL60_RS06380 WP_132994605.1 1312351..1313136(+) (comA) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGAGACCTAACAAAAAAACAGCAAATATTTTACAAATTGGTATTCATAGACAAGATGAACAATGGCAATTCCTCTGGTT
TGATGAACAAAAACAACCGCACTTTTTAACTAAAAACGATAATCCCCCTCTTAAACTATCTGATTTGACACCACAATTCG
CAAAGAATATCTGCACATGGATAGCCTGTTTACCCAATCAGCACGTCTGGGTAAAAACAATCATATTGACGCAAAAGTTA
AATGAGCAAGAATGCCAACAACAATGTAACTTAATCATAGAAAATGAATTGCCGACAGATTTCGGTGATATTTGGTACGA
CTACCAATATAAAGAATTAACACAAGGTGCAAAACTGGCTATCTATGTTGTTAGAAAACAAACAGCTCAAAATTATGTGC
ATCGTTTTTTCCCTATAAAAATTAATACGTTAGATTGCTTAAGCAATAGCCTACTACGAGCATTCCATTATTTTCACCCC
CCAAAAGAAAAGATGGAAACATTATATTTATATCAGGATCGTAACGGCTGTATAGCAATACAAGAAATCGGACAACAAAC
AATCGTTCTACAAAAAAATGACAAAAATATTACCGCACTTTATCAAGAATTCTGCCAACGTTTTAACTGCCAACCTCAAC
AAGTTTGGTGCTATTGTGAAAAAAATGAACAACAAAATATCACTCATAAATGGAACATCATTAATACCGAATTGCCTTTT
ATTGCTTTAGGAAATGCTCTTTGGGGAAGAAATGAACTCTATCAAATAACGGAATTAAAGGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.698

98.851

0.402
  comA Haemophilus influenzae Rd KW20

39.535

98.851

0.391