Detailed information NTG0455634

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUZ56_RS20585
• Genome accession: NZ_CP054997
• Coordinates: 4242334..4243134 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain STIN_84
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4237334..4248134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ56_RS20550 (HUZ56_20505)	gspH	4237490..4238005 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
HUZ56_RS20555 (HUZ56_20510)	gspI	4238002..4238367 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HUZ56_RS20560 (HUZ56_20515)	gspJ	4238364..4238960 (+)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
HUZ56_RS20565 (HUZ56_20520)	gspK	4238957..4239943 (+)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
HUZ56_RS20570 (HUZ56_20525)	gspL	4239930..4241123 (+)	1194	WP_211603728.1	type II secretion system protein GspL	-
HUZ56_RS20575 (HUZ56_20530)	-	4241116..4241601 (+)	486	WP_004151943.1	type II secretion system protein M	-
HUZ56_RS20580 (HUZ56_20535)	-	4241591..4242337 (+)	747	WP_004145897.1	type II secretion system protein N	-
HUZ56_RS20585 (HUZ56_20540)	pilD	4242334..4243134 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HUZ56_RS20590 (HUZ56_20545)	hrpB	4243182..4245611 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
HUZ56_RS20595 (HUZ56_20550)	thpR	4245684..4246220 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HUZ56_RS20600 (HUZ56_20555)	sfsA	4246220..4246936 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HUZ56_RS20605 (HUZ56_20560)	dksA	4247099..4247554 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=455634 HUZ56_RS20585 WP_004145898.1 4242334..4243134(+) (pilD) [Klebsiella pneumoniae strain STIN_84]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=455634 HUZ56_RS20585 WP_004145898.1 4242334..4243134(+) (pilD) [Klebsiella pneumoniae strain STIN_84]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425