Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JFL55_RS02385 Genome accession   NZ_CP066564
Coordinates   499987..500694 (+) Length   235 a.a.
NCBI ID   WP_011608614.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494987..505694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS02345 (JFL55_02345) - 495277..495519 (+) 243 WP_011608610.1 hypothetical protein -
  JFL55_RS02350 (JFL55_02350) - 495558..496292 (+) 735 WP_012341579.1 4'-phosphopantetheinyl transferase family protein -
  JFL55_RS02360 (JFL55_02360) gltX 496631..498073 (-) 1443 WP_012341580.1 glutamate--tRNA ligase -
  JFL55_RS02380 (JFL55_02380) pilC 498770..499990 (+) 1221 WP_012341581.1 type II secretion system F family protein Machinery gene
  JFL55_RS02385 (JFL55_02385) pilD 499987..500694 (+) 708 WP_011608614.1 prepilin peptidase Machinery gene
  JFL55_RS02390 (JFL55_02390) coaE 500714..501361 (+) 648 WP_012341582.1 dephospho-CoA kinase -
  JFL55_RS02395 (JFL55_02395) yacG 501358..501552 (+) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  JFL55_RS02400 (JFL55_02400) - 501956..503332 (+) 1377 WP_012341585.1 alanine/glycine:cation symporter family protein -
  JFL55_RS02405 (JFL55_02405) raiA 503568..503885 (+) 318 WP_012341586.1 ribosome-associated translation inhibitor RaiA -
  JFL55_RS02410 (JFL55_02410) hpt 504089..504628 (+) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  JFL55_RS02415 (JFL55_02415) sodA 504756..505385 (-) 630 WP_012341587.1 superoxide dismutase [Mn] -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27007.51 Da        Isoelectric Point: 8.1958

>NTDB_id=455505 JFL55_RS02385 WP_011608614.1 499987..500694(+) (pilD) [Histophilus somni strain ASc-MMNZ-VFA-69]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLIGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=455505 JFL55_RS02385 WP_011608614.1 499987..500694(+) (pilD) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGATTTATCTGGCTTATATGTTGTTTGGTGGACTTTGTGGCTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCGGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAATTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGCGATTACTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CATTCTTATGCCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTCCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362