Detailed information NTG0045542

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CT43_RS05945
• Genome accession: NC_017208
• Coordinates: 1184890..1187490 (+)
• Length: 866 a.a.
• NCBI ID: WP_000365411.1
• Uniprot ID: A0AAN4HM22
• Organism: Bacillus thuringiensis serovar chinensis CT-43
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1179890..1192490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CT43_RS05915 (CT43_CH1097)	prsA	1180654..1181511 (-)	858	WP_001214221.1	peptidylprolyl isomerase PrsA	-
CT43_RS31790 (CT43_CH1098)	-	1181640..1181771 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
CT43_RS05920 (CT43_CH1099)	-	1181872..1182729 (+)	858	WP_000364446.1	YitT family protein	-
CT43_RS05925 (CT43_CH1100)	-	1182755..1182952 (-)	198	WP_000527408.1	DUF3813 domain-containing protein	-
CT43_RS05930 (CT43_CH1101)	-	1182953..1183093 (-)	141	WP_000516816.1	hypothetical protein	-
CT43_RS05935 (CT43_CH1102)	-	1183199..1184008 (-)	810	WP_001041229.1	Cof-type HAD-IIB family hydrolase	-
CT43_RS05940 (CT43_CH1103)	-	1184500..1184679 (+)	180	WP_000531422.1	YjzC family protein	-
CT43_RS05945 (CT43_CH1104)	clpC	1184890..1187490 (+)	2601	WP_000365411.1	ATP-dependent chaperone ClpB	Regulator
CT43_RS05950 (CT43_CH1105)	-	1187529..1187711 (-)	183	WP_001211116.1	YjzD family protein	-
CT43_RS05955 (CT43_CH1106)	-	1187868..1188602 (+)	735	WP_000028688.1	hydrolase	-
CT43_RS05960 (CT43_CH1107)	-	1188632..1189504 (+)	873	WP_000487723.1	NAD(P)-dependent oxidoreductase	-
CT43_RS05965 (CT43_CH1108)	comZ	1189559..1189735 (+)	177	WP_001986215.1	ComZ family protein	Regulator
CT43_RS05970 (CT43_CH1110)	fabH	1189967..1190899 (+)	933	WP_001100533.1	beta-ketoacyl-ACP synthase III	-
CT43_RS05975 (CT43_CH1111)	fabF	1190931..1192169 (+)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97424.43 Da
• Isoelectric Point: 5.1584

>NTDB_id=45542 CT43_RS05945 WP_000365411.1 1184890..1187490(+) (clpC) [Bacillus thuringiensis serovar chinensis CT-43]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQSAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFARLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLAERHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=45542 CT43_RS05945 WP_000365411.1 1184890..1187490(+) (clpC) [Bacillus thuringiensis serovar chinensis CT-43]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAAGCGCTGAAAGCTTAATTAAAAAGAAACCTTCTGTAACAGGGAGCGGTGCAGAG
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAATTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTCGAACATGTATTGCTTGCTTTTTCCGAAGAAAAAGGCGATATAAATCAATTATTTGCAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCAGAAGTGAGAGCTGGGAAAATTGATCCTGTTATCGGCCGAGA
TAGTGAAATTCGACGCGTTATCCGCATTCTTTCACGTAAAACGAAAAACAATCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCACAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCGCTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATCGTTGGAGCTGGTAAAACAGAAG
GTGCGATGGATGCAGGAAATATGTTAAAACCGATGCTTGCTCGTGGTGAACTGCATTGTATCGGGGCGACAACATTAGAT
GAATATCGTAAATATATTGAAAAAGATCCAGCACTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACGATTTCCATATTACGTGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCGGATAAAGCGATTGACCTTGTTGATGAAGCG
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCTACAGAATTAGATGAAGTAACGCGTCGTATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAGCGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCTGCAATCGAAAAAGAATTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCTAAACTTGTTGAAGGC
GAACGTGAGAAATTACTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCCTAGTATC
AGACGCGGTTCTTCGTGCACGCGCTGGTATTAAAGACCCGAATCGTCCAATTGGTTCCTTCATTTTCTTAGGCCCTACGG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATTGACATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTAGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCAGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGTATTACAGATTCACAAGGAAGAACAGTAGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTACTAGAGGGATTAGAAGAAGATGGTTCGATTAAAGAGGAATCAAGAGA
CCTTGTAATGGGGCAATTAAGAGGACATTTCCGCCCTGAATTTTTAAACCGTGTTGATGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGCCGTCTAGCTGAACGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTAGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCAAGAGAATTAATTGCAGGAACAATTACAGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATGA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48	100	0.485
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.762	100	0.421
clpC	Lactococcus lactis subsp. cremoris KW2	47.339	82.448	0.39