Detailed information NTG0455350

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JFL51_RS01875
• Genome accession: NZ_CP066560
• Coordinates: 362017..363261 (-)
• Length: 414 a.a.
• NCBI ID: WP_075293630.1
• Uniprot ID: A0A9Q7E5Q0
• Organism: Histophilus somni strain ASc-MMNZ-VFA-072
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 357017..368261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL51_RS01865 (JFL51_01865)	-	358060..359610 (+)	1551	WP_132995303.1	exopolyphosphatase	-
JFL51_RS01870 (JFL51_01870)	ilvD	359783..361618 (+)	1836	WP_132995301.1	dihydroxy-acid dehydratase	-
JFL51_RS01875 (JFL51_01875)	clpX	362017..363261 (-)	1245	WP_075293630.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
JFL51_RS01880 (JFL51_01880)	clpP	363277..363858 (-)	582	WP_012341086.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JFL51_RS01885 (JFL51_01885)	tig	363944..365242 (-)	1299	WP_011609585.1	trigger factor	-
JFL51_RS01890 (JFL51_01890)	pilB	365625..367016 (+)	1392	WP_101812545.1	GspE/PulE family protein	Machinery gene

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 46039.80 Da
• Isoelectric Point: 4.5662

>NTDB_id=455350 JFL51_RS01875 WP_075293630.1 362017..363261(-) (clpX) [Histophilus somni strain ASc-MMNZ-VFA-072]
MTKEKELHCSFCGKEQKEVDKLIAGTSGYICNECIELCHDMLANADDIEEIDEEFQEEEPKLPTPHEIRAHLDDYVIGQD
YAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIEKAQQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRVDTSK
ILFICGGAFAGLDKIIEKRTNTGGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMKFGLIPEFIGRLPVIAPLSELDEEA
LVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIENLQKVIVEEE
TVTENKVPVLKFNS

Nucleotide

• Length: 1245 bp

>NTDB_id=455350 JFL51_RS01875 WP_075293630.1 362017..363261(-) (clpX) [Histophilus somni strain ASc-MMNZ-VFA-072]
ATGACAAAAGAAAAAGAATTACATTGCTCTTTTTGTGGTAAGGAACAAAAAGAAGTAGATAAATTAATTGCAGGCACATC
CGGTTATATTTGTAATGAGTGTATTGAATTATGTCATGACATGTTAGCTAATGCGGATGACATCGAAGAAATTGATGAAG
AATTTCAAGAGGAAGAGCCTAAATTACCGACACCACATGAAATTCGTGCACATTTAGATGATTATGTCATAGGCCAAGAT
TATGCTAAAAAAGTATTAGCTGTGGCGGTGTATAATCATTATAAACGTTTACGTAGCGAAAAAAATACTTCTGAGGTTGA
ATTGGGCAAAAGTAATATTTTGCTTATCGGCCCGACAGGCAGTGGCAAGACTTTATTGGCACAAACGTTAGCTCGTATGC
TCAATGTTCCCTTTGCAATGGCAGATGCAACAACTTTAACTGAAGCGGGATATGTTGGTGAAGATGTTGAAAATGTCTTG
CAAAAATTATTACAAAATTGTGATTATGATATAGAGAAAGCTCAACAAGGTATTATCTATATTGATGAAATTGATAAGAT
TACACGTAAGTCTGAAAATCCTTCTATTACTCGTGATGTATCAGGCGAAGGTGTGCAGCAGGCTTTACTAAAATTAGTTG
AAGGAACGGTAGCTTCTATTCCTCCACAAGGCGGACGAAAGCATCCTCAACAAGAAATGTTGCGTGTGGACACCTCTAAG
ATTTTATTTATTTGTGGCGGTGCTTTTGCCGGTTTAGATAAAATTATTGAGAAAAGAACGAATACCGGTGGCAAAGGTAT
TGGTTTTGGTGCTGATGTTCGTATTGATGAAGAGAAAGTCAGTTTAACCGAATTATTTAAGCAAGTTGAACCTGATGATT
TAATGAAATTTGGCTTAATACCGGAGTTTATCGGTCGTTTACCTGTTATCGCACCTTTAAGCGAACTGGATGAGGAGGCT
TTGGTAAAAATTTTAACTGAGCCGAAAAATGCCCTAACTAAGCAATATCAAGTTTTATTCAGCTTAGAAAATATTGAATT
AGAATTTACCCAAGAAGCATTGATTGCAATGGCGAAAAAAGCACTAGCTCGTAAAACAGGTGCCAGAGGTTTGCGATCTA
TTGTTGAAACCCTATTGCTTGATACTATGTATGATCTCCCTTCTATTGAAAACTTACAGAAAGTTATAGTGGAAGAAGAA
ACAGTCACCGAAAATAAAGTGCCAGTATTGAAGTTCAATAGTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-310)

3D structure

• AlphaFold DB: A0A9Q7E5Q0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.135	100	0.594
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	97.826	0.531