Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   JFL50_RS01470 Genome accession   NZ_CP066559
Coordinates   282652..283329 (+) Length   225 a.a.
NCBI ID   WP_011608419.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-071     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277652..288329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL50_RS01430 (JFL50_01430) tolR 278109..278531 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  JFL50_RS01435 (JFL50_01435) tolA 278550..279605 (+) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  JFL50_RS01440 (JFL50_01440) tolB 279633..280937 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL50_RS01445 (JFL50_01445) pal 280947..281402 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  JFL50_RS01465 (JFL50_01465) comN 282076..282603 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL50_RS01470 (JFL50_01470) comO 282652..283329 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  JFL50_RS01475 (JFL50_01475) comP 283332..284012 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL50_RS01480 (JFL50_01480) comQ 284035..284310 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFL50_RS01485 (JFL50_01485) recC 284363..287797 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25839.55 Da        Isoelectric Point: 8.6697

>NTDB_id=455287 JFL50_RS01470 WP_011608419.1 282652..283329(+) (comO) [Histophilus somni strain ASc-MMNZ-VFA-071]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFEQDKSGKSIVV
AQADNEPPNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFNWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=455287 JFL50_RS01470 WP_011608419.1 282652..283329(+) (comO) [Histophilus somni strain ASc-MMNZ-VFA-071]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGAACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCCCCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGTGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGGTGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TAATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCTATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.196

92.889

0.476