Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   JFL50_RS01475 Genome accession   NZ_CP066559
Coordinates   283332..284012 (+) Length   226 a.a.
NCBI ID   WP_132995094.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-071     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278332..289012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL50_RS01435 (JFL50_01435) tolA 278550..279605 (+) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  JFL50_RS01440 (JFL50_01440) tolB 279633..280937 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL50_RS01445 (JFL50_01445) pal 280947..281402 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  JFL50_RS01465 (JFL50_01465) comN 282076..282603 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL50_RS01470 (JFL50_01470) comO 282652..283329 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  JFL50_RS01475 (JFL50_01475) comP 283332..284012 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL50_RS01480 (JFL50_01480) comQ 284035..284310 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFL50_RS01485 (JFL50_01485) recC 284363..287797 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  JFL50_RS01490 (JFL50_01490) ruvA 287876..288490 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26225.62 Da        Isoelectric Point: 9.8843

>NTDB_id=455288 JFL50_RS01475 WP_132995094.1 283332..284012(+) (comP) [Histophilus somni strain ASc-MMNZ-VFA-071]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFVWCERKYLFKKRPKKATYEARLSQYINLELLDLFQHKLHSPPAILPRDKVNYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=455288 JFL50_RS01475 WP_132995094.1 283332..284012(+) (comP) [Histophilus somni strain ASc-MMNZ-VFA-071]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGGAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTGTATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAAGGCTAAGTCAGTATATAAATCTTGAGTTACTGGACTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGTAAATTACCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434