Detailed information NTG0455260

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HUW52_RS09585
• Genome accession: NZ_CP054880
• Coordinates: 2153294..2155528 (+)
• Length: 744 a.a.
• NCBI ID: WP_175553493.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 43A
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2148294..2160528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUW52_RS09560 (HUW52_09560)	-	2149389..2150048 (+)	660	WP_175553491.1	transglutaminase family protein	-
HUW52_RS09565 (HUW52_09565)	-	2150092..2150715 (+)	624	WP_016986046.1	glutathione S-transferase family protein	-
HUW52_RS09570 (HUW52_09570)	-	2150839..2151771 (+)	933	WP_016986045.1	ABC transporter ATP-binding protein	-
HUW52_RS09575 (HUW52_09575)	-	2151768..2152547 (+)	780	WP_008087860.1	ABC transporter permease	-
HUW52_RS09580 (HUW52_09580)	-	2152639..2153157 (-)	519	WP_175553492.1	DUF2062 domain-containing protein	-
HUW52_RS09585 (HUW52_09585)	comA	2153294..2155528 (+)	2235	WP_175553493.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HUW52_RS09590 (HUW52_09590)	exbB	2155630..2156265 (+)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HUW52_RS09595 (HUW52_09595)	-	2156262..2156690 (+)	429	WP_007908223.1	biopolymer transporter ExbD	-
HUW52_RS09600 (HUW52_09600)	lpxK	2156690..2157700 (+)	1011	WP_175553494.1	tetraacyldisaccharide 4'-kinase	-
HUW52_RS09605 (HUW52_09605)	-	2157722..2157907 (+)	186	WP_175553495.1	Trm112 family protein	-
HUW52_RS09610 (HUW52_09610)	kdsB	2157904..2158668 (+)	765	WP_016986042.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HUW52_RS09615 (HUW52_09615)	-	2158668..2159132 (+)	465	WP_016986041.1	low molecular weight protein-tyrosine-phosphatase	-
HUW52_RS09620 (HUW52_09620)	murB	2159129..2160148 (+)	1020	WP_016986040.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81934.10 Da
• Isoelectric Point: 10.3425

>NTDB_id=455260 HUW52_RS09585 WP_175553493.1 2153294..2155528(+) (comA) [Pseudomonas sp. 43A]
MRTGMMALAVGLLAPVFMSALPPVWLLLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAELDGETRWVEG
RVVGLPQNSDGVVRFELADALSRHEKLPPLMRLAWYAGPPVNSGERWRLAVKLKRAGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLEVDAQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYML
VGGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLFDPL
ASLRPGFWLSFTAVAVLIFTFGGRLGGWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVALPPAL
LGTLMLPVPHVGEGLLWLAGGLIDALFRALAVIAGQWPAWTAAAVPGWVWLLGSLGAVLLLLPRGVPMRPLGWPLLLLLV
VPPRERLDAGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLSVKKLDLMLLSHADADHAGGA
LAITRGLTVDQVISGDPAGLPAQLRAEACESGRQWQWDGVRFQLWQWADARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RSLLDSPLVAPTHWLQAPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GRFKPPWTMRQQRRFWRDTPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=455260 HUW52_RS09585 WP_175553493.1 2153294..2155528(+) (comA) [Pseudomonas sp. 43A]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGTCGGCATTACCGCCGGTCTGGTTGCT
GCTGTTATTGCCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTCTGCTGTTTGGCTTCACGT
GGGCCAGTGTCGGTGCGCAGTGGGCGTTGAATGATCGTTTGCCGGCCGAGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
CGGGTGGTCGGGTTGCCGCAGAACAGCGACGGCGTGGTGCGTTTCGAATTGGCTGATGCGCTCTCCCGTCACGAAAAACT
GCCGCCGCTGATGCGCCTTGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGTGCGGGTGGTTTGCTCAATCCGGACGCTTTCGATTACGAGGCGTGGTTACTGGCGCAACGCATCGGTGCGACTGGC
ACGATCAAGGACGGCCAACGCCTGAGCGAGGCACGCTGGGCCTGGCGCGACAGTATTCGGCAGCGTTTGCTCGAGGTGGA
CGCACAGGGGCGGGGCGGGGCATTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGACTCAGTCGTGAGGACTGGCAGATTT
TGCAGGATACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTGGCGGCGGTGATGTACATGCTC
GTCGGCGGATTGGCCCGCTTTGGCCTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGCGGCCTGGCATTCGCGGC
TGCGCTCGGTTATGGCCTCCTTGCCGGTTTCGACGTGCCGGTACAGCGCGCCTGCGTGATGGTCGGGCTGGTACTGTTGT
GGCGCCTGCGCTTTCGTCATCTTGGTGCGTGGTGGCCGTTGTTGCTGGCGTTCAATGCGGTACTTTTGTTCGATCCCCTG
GCCAGCCTGCGCCCCGGCTTCTGGTTGTCCTTTACGGCCGTAGCAGTGTTGATTTTTACCTTTGGTGGCCGCTTGGGTGG
GTGGCGTTGGTGGCAAACCTGGACGCGGGCGCAATGGTTGATAGCCATCGGTCTGTGCCCGGTGTTGCTGGCACTGAATC
TGCCGATCAGCCTTAGCGGGCCATTGGCAAATCTGTTGGCGGTGCCTTGGGTCAGCCTCGTGGCGTTGCCGCCGGCACTG
CTCGGCACGCTGATGTTACCGGTGCCGCATGTCGGGGAAGGTCTTTTGTGGCTGGCCGGCGGTTTGATCGACGCGCTGTT
TCGCGCTTTGGCGGTGATTGCCGGGCAGTGGCCGGCATGGACAGCCGCCGCCGTGCCGGGCTGGGTCTGGTTGCTCGGCA
GCCTCGGTGCCGTGTTGTTGCTGTTGCCGCGCGGTGTGCCGATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTATTGGTT
GTGCCGCCACGCGAACGCCTGGATGCGGGATTGGCCGACATCTGGCAACTCGATGTCGGCCAAGGCCTGGCCATTCTGAT
CCGCACGCGTCATCACACGCTGCTGTATGACGCCGGGCCGCGCTTTGGCGACTTTGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGCTGCGCAAACTGAGTGTAAAAAAACTCGATCTGATGCTGCTCAGCCATGCGGACGCCGATCACGCTGGCGGCGCT
TTGGCGATCACCCGTGGTCTGACCGTCGATCAAGTGATCAGCGGCGACCCGGCGGGATTGCCCGCGCAGTTGCGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGATGCCCGCGACAGCA
ATCAGCGTTCCTGCGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGATATCGACACCCACGCCGAA
CGCTCGCTGCTCGACAGTCCGCTGGTTGCCCCGACGCACTGGCTGCAAGCGCCTCACCATGGCAGCCGCAGTTCATCGTC
GATGGCGCTGCTTAACGTCTTGAAGCCAGAGTCCGTGCTGATTTCGCGAGGTCATGGCAATTCATTTGGCCATCCCCACC
CAACCGTGCTCGCGCGTTATCGGAAACAGGGCCTGCGCATTTACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGTGATACGCCTGCGCTCGCCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.785	96.371	0.595
comA	Ralstonia pseudosolanacearum GMI1000	32.55	100	0.372