Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HUW60_RS03595 Genome accession   NZ_CP054877
Coordinates   748941..749900 (+) Length   319 a.a.
NCBI ID   WP_190600178.1    Uniprot ID   -
Organism   Candidatus Vesicomyosocius sp. SY067_SCS001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743941..754900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW60_RS03575 thrC 744666..745730 (+) 1065 WP_190600174.1 threonine synthase -
  HUW60_RS03580 cysM 745749..746636 (+) 888 WP_190600175.1 cysteine synthase CysM -
  HUW60_RS03585 - 746633..747916 (+) 1284 WP_190600176.1 chloride channel protein -
  HUW60_RS03590 - 747903..748325 (-) 423 WP_190600177.1 CopD family protein -
  HUW60_RS03595 pilA 748941..749900 (+) 960 WP_190600178.1 signal recognition particle-docking protein FtsY Machinery gene
  HUW60_RS03600 hemC 750133..751047 (-) 915 WP_190600179.1 hydroxymethylbilane synthase -
  HUW60_RS03605 argH 751503..752945 (+) 1443 WP_190600180.1 argininosuccinate lyase -
  HUW60_RS03610 fmt 752945..753913 (+) 969 WP_190600181.1 methionyl-tRNA formyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35059.40 Da        Isoelectric Point: 10.2314

>NTDB_id=455244 HUW60_RS03595 WP_190600178.1 748941..749900(+) (pilA) [Candidatus Vesicomyosocius sp. SY067_SCS001]
MFNFLKKNQSKSENLDTNKQTSLKQRLDKSRQKLGSSLSSLLLGKKEINENLLEELETLLITADVGINTTDKILKSTRKN
ASRKTLKNAENLYQFLKDELAKLFIENNQLNISINETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAA
IEQLKIWGQRNNIPVVAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQNNLMKELTKIKRVITKQNINAPHETM
LVIDGGSGQNVINQAKEFNKAVKLSGISITKLDGTAKGGGLFSIADELNLPIRYIGIGEGIDDLKIFQPKEFINALFDQ

Nucleotide


Download         Length: 960 bp        

>NTDB_id=455244 HUW60_RS03595 WP_190600178.1 748941..749900(+) (pilA) [Candidatus Vesicomyosocius sp. SY067_SCS001]
ATGTTTAATTTTTTAAAAAAAAATCAGTCAAAATCAGAAAATTTAGACACAAACAAACAAACTTCATTAAAACAACGCCT
AGATAAATCTAGACAAAAATTAGGATCTAGCTTATCTTCTTTATTATTGGGTAAAAAAGAAATTAATGAGAATTTATTAG
AAGAACTAGAAACACTATTAATCACTGCTGATGTCGGTATTAATACCACAGATAAAATACTAAAATCTACACGTAAAAAC
GCTTCTAGAAAAACCTTAAAAAATGCTGAAAACTTGTACCAATTCTTAAAAGATGAATTGGCTAAATTGTTCATTGAAAA
CAACCAACTTAATATTAGTATTAATGAGACTTTTGTTATTCTAGTCGTAGGTGTTAATGGCGCTGGTAAAACTACCTTGA
TTGGTAAATTAGCAAAGTCTTTTCAAAATCAAGGCAAATCGGTTATGCTAGCAGCAGGTGATACTTTCCGCGCTGCAGCC
ATTGAACAACTCAAAATATGGGGACAACGCAATAACATCCCTGTTGTAGCAAAAACTTTAGGTGCTGATACTGCTTCTGT
CATTTTTGATGCCTACCAATCAGCGCAAGCCAAGAATATTGACATTCTACTTGCTGATACTGCTGGGCGATTACATACAC
AAAACAATCTTATGAAAGAATTAACCAAAATTAAACGCGTTATTACCAAACAAAATATAAATGCGCCACATGAGACTATG
CTAGTTATTGACGGAGGATCAGGACAAAATGTCATCAATCAAGCCAAAGAGTTTAATAAGGCAGTTAAACTAAGTGGTAT
TAGTATCACTAAACTGGATGGTACTGCTAAAGGCGGGGGTTTATTTTCGATTGCTGACGAACTTAATTTACCTATTCGCT
ATATTGGCATAGGTGAAGGGATTGATGATCTTAAAATCTTTCAACCTAAAGAATTCATAAACGCTTTGTTTGATCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(118-317)

SRP54-type protein, helical bundle domain (SRP54_N)

(34-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.356

93.417

0.498