Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   JFL49_RS01460 Genome accession   NZ_CP066558
Coordinates   284030..284305 (+) Length   91 a.a.
NCBI ID   WP_411814732.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-070     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279030..289305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL49_RS01420 (JFL49_01420) tolB 279628..280932 (+) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL49_RS01425 (JFL49_01425) pal 280942..281397 (+) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  JFL49_RS01445 (JFL49_01445) comN 282071..282598 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL49_RS01450 (JFL49_01450) comO 282647..283324 (+) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  JFL49_RS01455 (JFL49_01455) comP 283327..284007 (+) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  JFL49_RS01460 (JFL49_01460) comQ 284030..284305 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFL49_RS01465 (JFL49_01465) recC 284358..287792 (+) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  JFL49_RS01470 (JFL49_01470) ruvA 287871..288485 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10862.61 Da        Isoelectric Point: 9.0489

>NTDB_id=455232 JFL49_RS01460 WP_411814732.1 284030..284305(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-070]
MITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGYKFKINCEGKNVRVS
YANQQVNLLLD

Nucleotide


Download         Length: 276 bp        

>NTDB_id=455232 JFL49_RS01460 WP_411814732.1 284030..284305(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-070]
TTGATCACGTTATTAGTCACAATGATGATATTTTCTACATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAA
AAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGCAAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGC
ATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTATAAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCT
TATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(48-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

47.059

93.407

0.44