Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   JF649_RS08775 Genome accession   NZ_CP066541
Coordinates   1784781..1785887 (+) Length   368 a.a.
NCBI ID   WP_129322370.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779781..1790887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF649_RS08755 (JF649_08735) hasA 1780460..1781719 (+) 1260 WP_129322366.1 hyaluronan synthase HasA -
  JF649_RS08760 (JF649_08740) hasB 1781755..1782963 (+) 1209 WP_129322368.1 UDP-glucose 6-dehydrogenase HasB -
  JF649_RS08765 (JF649_08745) hasC 1783144..1784058 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  JF649_RS08770 (JF649_08750) yaaA 1784366..1784779 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  JF649_RS08775 (JF649_08755) recF 1784781..1785887 (+) 1107 WP_129322370.1 DNA replication/repair protein RecF Machinery gene
  JF649_RS08780 (JF649_08760) - 1785942..1786805 (-) 864 WP_002992310.1 GRP family sugar transporter -
  JF649_RS08785 (JF649_08765) guaB 1787008..1788489 (-) 1482 WP_002992312.1 IMP dehydrogenase -
  JF649_RS08790 (JF649_08770) trpS 1788797..1789819 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41813.68 Da        Isoelectric Point: 7.8294

>NTDB_id=455217 JF649_RS08775 WP_129322370.1 1784781..1785887(+) (recF) [Streptococcus pyogenes strain MGAS270]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFTDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=455217 JF649_RS08775 WP_129322370.1 1784781..1785887(+) (recF) [Streptococcus pyogenes strain MGAS270]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAACAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTACCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465