Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   HUW54_RS02750 Genome accession   NZ_CP054876
Coordinates   571586..572155 (+) Length   189 a.a.
NCBI ID   WP_000872865.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dresden-275757     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 566586..577155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW54_RS02725 (HUW54_02725) cysE 567799..568446 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  HUW54_RS02730 (HUW54_02730) cysS 568430..569830 (+) 1401 WP_000631957.1 cysteine--tRNA ligase -
  HUW54_RS02735 (HUW54_02735) - 569823..570227 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  HUW54_RS02740 (HUW54_02740) rlmB 570235..570981 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  HUW54_RS02745 (HUW54_02745) - 570981..571505 (+) 525 WP_000664738.1 NYN domain-containing protein -
  HUW54_RS02750 (HUW54_02750) sigH 571586..572155 (+) 570 WP_000872865.1 RNA polymerase sigma factor Regulator
  HUW54_RS02755 (HUW54_02755) rpmG 572270..572413 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  HUW54_RS02760 (HUW54_02760) secE 572469..572651 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  HUW54_RS02765 (HUW54_02765) nusG 572664..573212 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  HUW54_RS02770 (HUW54_02770) rplK 573393..573815 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  HUW54_RS02775 (HUW54_02775) rplA 574023..574715 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  HUW54_RS02780 (HUW54_02780) rplJ 574987..575487 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  HUW54_RS02785 (HUW54_02785) rplL 575530..575898 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  HUW54_RS02790 (HUW54_02790) - 576073..576681 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.87 Da        Isoelectric Point: 9.6015

>NTDB_id=455202 HUW54_RS02750 WP_000872865.1 571586..572155(+) (sigH) [Staphylococcus aureus strain Dresden-275757]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKTI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=455202 HUW54_RS02750 WP_000872865.1 571586..572155(+) (sigH) [Staphylococcus aureus strain Dresden-275757]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AACGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968