Detailed information NTG0045520

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: VPBB_RS05305
• Genome accession: NC_019955
• Coordinates: 1147651..1148940 (+)
• Length: 429 a.a.
• NCBI ID: WP_152913508.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus BB22OP
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1142651..1153940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPBB_RS05290 (VPBB_1033)	lrp	1143150..1143644 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
VPBB_RS05295 (VPBB_1034)	-	1143797..1146883 (+)	3087	WP_015296510.1	DNA translocase FtsK	-
VPBB_RS05300 (VPBB_1035)	lolA	1146958..1147584 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
VPBB_RS05305 (VPBB_1036)	rarA	1147651..1148940 (+)	1290	WP_152913508.1	replication-associated recombination protein A	Machinery gene
VPBB_RS05310 (VPBB_1037)	serS	1149032..1150339 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
VPBB_RS05315 (VPBB_1038)	-	1150709..1151275 (+)	567	WP_015296512.1	hypothetical protein	-
VPBB_RS05320	-	1151269..1151709 (+)	441	WP_029826044.1	hypothetical protein	-
VPBB_RS05325 (VPBB_1039)	-	1151844..1152110 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
VPBB_RS05330 (VPBB_1040)	bioA	1152180..1153460 (-)	1281	WP_015296514.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47592.81 Da
• Isoelectric Point: 5.8532

>NTDB_id=45520 VPBB_RS05305 WP_152913508.1 1147651..1148940(+) (rarA) [Vibrio parahaemolyticus BB22OP]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFVDNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=45520 VPBB_RS05305 WP_152913508.1 1147651..1148940(+) (rarA) [Vibrio parahaemolyticus BB22OP]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGTTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCTCTTTCCGCGTGGGACTGCTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGCCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (171-248)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385