Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BSNT_RS18815 Genome accession   NC_017196
Coordinates   3503643..3504365 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto BEST195     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498643..3509365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSNT_RS18780 (BSNT_05382) fliW 3498783..3499214 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  BSNT_RS18785 (BSNT_05383) yviE 3499235..3499810 (-) 576 WP_014481045.1 DUF6470 family protein -
  BSNT_RS18790 (BSNT_05384) flgL 3499857..3500753 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  BSNT_RS18795 (BSNT_05385) flgK 3500764..3502287 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  BSNT_RS18800 (BSNT_05386) flgN 3502306..3502788 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BSNT_RS18805 (BSNT_05387) flgM 3502804..3503070 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSNT_RS18810 (BSNT_05388) yvyF 3503151..3503570 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  BSNT_RS18815 (BSNT_05389) comFC 3503643..3504365 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  BSNT_RS18820 (BSNT_05390) comFB 3504329..3504625 (-) 297 WP_003227989.1 late competence protein ComFB -
  BSNT_RS18825 (BSNT_05392) comFA 3504685..3506076 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  BSNT_RS18830 (BSNT_05393) fakBA 3506183..3507028 (-) 846 WP_014481053.1 DegV family protein -
  BSNT_RS18835 (BSNT_05394) degU 3507126..3507815 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  BSNT_RS18840 (BSNT_05395) degS 3507898..3509055 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=45519 BSNT_RS18815 WP_014481051.1 3503643..3504365(-) (comFC) [Bacillus subtilis subsp. natto BEST195]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=45519 BSNT_RS18815 WP_014481051.1 3503643..3504365(-) (comFC) [Bacillus subtilis subsp. natto BEST195]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment