Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   JF649_RS06925 Genome accession   NZ_CP066541
Coordinates   1382985..1384019 (-) Length   344 a.a.
NCBI ID   WP_030126324.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS270     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1377985..1389019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF649_RS06890 (JF649_06875) - 1378761..1379063 (-) 303 WP_129321697.1 YlxQ-related RNA-binding protein -
  JF649_RS06895 (JF649_06880) - 1379056..1379352 (-) 297 WP_002983486.1 YlxR family protein -
  JF649_RS06900 (JF649_06885) nusA 1379368..1380525 (-) 1158 WP_129321696.1 transcription termination factor NusA -
  JF649_RS06905 (JF649_06890) rimP 1380700..1381236 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  JF649_RS06915 (JF649_06900) trmB 1381495..1382130 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JF649_RS06920 (JF649_06905) - 1382130..1382921 (-) 792 WP_002983385.1 phosphotransferase family protein -
  JF649_RS06925 (JF649_06910) pptB 1382985..1384019 (-) 1035 WP_030126324.1 ABC transporter permease Regulator
  JF649_RS06930 (JF649_06915) pptA 1384022..1384747 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  JF649_RS06935 (JF649_06920) - 1384819..1385238 (+) 420 WP_129321695.1 HIT family protein -
  JF649_RS06940 (JF649_06925) - 1385235..1385591 (+) 357 WP_002988657.1 hypothetical protein -
  JF649_RS06945 (JF649_06930) - 1385702..1386985 (-) 1284 WP_129321694.1 LCP family protein -
  JF649_RS06950 (JF649_06935) - 1386994..1387518 (-) 525 WP_111704937.1 N-acetyltransferase -
  JF649_RS06955 (JF649_06940) tsaE 1387493..1387954 (-) 462 WP_030126320.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40214.40 Da        Isoelectric Point: 10.3713

>NTDB_id=455196 JF649_RS06925 WP_030126324.1 1382985..1384019(-) (pptB) [Streptococcus pyogenes strain MGAS270]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVALSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=455196 JF649_RS06925 WP_030126324.1 1382985..1384019(-) (pptB) [Streptococcus pyogenes strain MGAS270]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGCGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427