Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HRF38_RS05100 Genome accession   NZ_CP054875
Coordinates   979543..980061 (-) Length   172 a.a.
NCBI ID   WP_003648134.1    Uniprot ID   A0A133PDF0
Organism   Lactobacillus gasseri strain EJL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 980610..981659 979543..980061 flank 549


Gene organization within MGE regions


Location: 979543..981659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRF38_RS05100 ssb 979543..980061 (-) 519 WP_003648134.1 single-stranded DNA-binding protein Machinery gene
  HRF38_RS05105 rpsF 980095..980391 (-) 297 WP_003648136.1 30S ribosomal protein S6 -
  HRF38_RS05110 - 980610..981659 (-) 1050 WP_087261269.1 IS30-like element ISLga1 family transposase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18499.16 Da        Isoelectric Point: 4.7531

>NTDB_id=455185 HRF38_RS05100 WP_003648134.1 979543..980061(-) (ssb) [Lactobacillus gasseri strain EJL]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=455185 HRF38_RS05100 WP_003648134.1 979543..980061(-) (ssb) [Lactobacillus gasseri strain EJL]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PDF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.494

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.432

100

0.506