Detailed information NTG0455176

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HUT20_RS29350
• Genome accession: NZ_CP054874
• Coordinates: 6459381..6461612 (-)
• Length: 743 a.a.
• NCBI ID: WP_015634696.1
• Uniprot ID: A0A2C9EIX9
• Organism: Pseudomonas protegens strain PGNL1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6454381..6466612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT20_RS29315 (HUT20_29315)	murB	6454757..6455776 (-)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-
HUT20_RS29320 (HUT20_29320)	-	6455773..6456237 (-)	465	WP_015634698.1	low molecular weight protein-tyrosine-phosphatase	-
HUT20_RS29325 (HUT20_29325)	kdsB	6456237..6457001 (-)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HUT20_RS29330 (HUT20_29330)	-	6456998..6457183 (-)	186	WP_011060103.1	Trm112 family protein	-
HUT20_RS29335 (HUT20_29335)	lpxK	6457208..6458218 (-)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
HUT20_RS29340 (HUT20_29340)	-	6458218..6458646 (-)	429	WP_011060101.1	ExbD/TolR family protein	-
HUT20_RS29345 (HUT20_29345)	exbB	6458643..6459278 (-)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HUT20_RS29350 (HUT20_29350)	comA	6459381..6461612 (-)	2232	WP_015634696.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
HUT20_RS29355 (HUT20_29355)	-	6461752..6462267 (+)	516	WP_015634695.1	DUF2062 domain-containing protein	-
HUT20_RS29360 (HUT20_29360)	-	6462321..6463100 (-)	780	WP_011060097.1	ABC transporter permease	-
HUT20_RS29365 (HUT20_29365)	-	6463097..6464029 (-)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
HUT20_RS29370 (HUT20_29370)	-	6464162..6464785 (-)	624	WP_011060095.1	glutathione S-transferase family protein	-
HUT20_RS29375 (HUT20_29375)	-	6464828..6465487 (-)	660	WP_011060094.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81353.72 Da
• Isoelectric Point: 10.8644

>NTDB_id=455176 HUT20_RS29350 WP_015634696.1 6459381..6461612(-) (comA) [Pseudomonas protegens strain PGNL1]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFS
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLAVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWVAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=455176 HUT20_RS29350 WP_015634696.1 6459381..6461612(-) (comA) [Pseudomonas protegens strain PGNL1]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGCCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTACTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGACGCGGTGCGGGGCTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCTCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCTTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGGCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTGCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGTGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCTTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCCCCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGTGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCCTTCGGGGCGGCGCATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

3D structure

• AlphaFold DB: A0A2C9EIX9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.575	96.501	0.623