Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HUT20_RS29345 Genome accession   NZ_CP054874
Coordinates   6458643..6459278 (-) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens strain PGNL1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6453643..6464278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT20_RS29310 (HUT20_29310) - 6454044..6454514 (-) 471 WP_011060107.1 (2Fe-2S)-binding protein -
  HUT20_RS29315 (HUT20_29315) murB 6454757..6455776 (-) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -
  HUT20_RS29320 (HUT20_29320) - 6455773..6456237 (-) 465 WP_015634698.1 low molecular weight protein-tyrosine-phosphatase -
  HUT20_RS29325 (HUT20_29325) kdsB 6456237..6457001 (-) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUT20_RS29330 (HUT20_29330) - 6456998..6457183 (-) 186 WP_011060103.1 Trm112 family protein -
  HUT20_RS29335 (HUT20_29335) lpxK 6457208..6458218 (-) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  HUT20_RS29340 (HUT20_29340) - 6458218..6458646 (-) 429 WP_011060101.1 ExbD/TolR family protein -
  HUT20_RS29345 (HUT20_29345) exbB 6458643..6459278 (-) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HUT20_RS29350 (HUT20_29350) comA 6459381..6461612 (-) 2232 WP_015634696.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUT20_RS29355 (HUT20_29355) - 6461752..6462267 (+) 516 WP_015634695.1 DUF2062 domain-containing protein -
  HUT20_RS29360 (HUT20_29360) - 6462321..6463100 (-) 780 WP_011060097.1 ABC transporter permease -
  HUT20_RS29365 (HUT20_29365) - 6463097..6464029 (-) 933 WP_011060096.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=455175 HUT20_RS29345 WP_011060100.1 6458643..6459278(-) (exbB) [Pseudomonas protegens strain PGNL1]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=455175 HUT20_RS29345 WP_011060100.1 6458643..6459278(-) (exbB) [Pseudomonas protegens strain PGNL1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTCACCCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAGCTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTGGGGCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877