Detailed information NTG0455149

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUT21_RS25280
• Genome accession: NZ_CP054873
• Coordinates: 5546107..5546979 (-)
• Length: 290 a.a.
• NCBI ID: WP_015637068.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain PGNR2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5541107..5551979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT21_RS25240 (HUT21_25240)	-	5541340..5542638 (-)	1299	WP_015637074.1	NAD(P)/FAD-dependent oxidoreductase	-
HUT21_RS25245 (HUT21_25245)	-	5542699..5542872 (-)	174	WP_015637073.1	DUF3094 family protein	-
HUT21_RS25250 (HUT21_25250)	-	5543062..5543691 (-)	630	WP_011063528.1	DUF1780 domain-containing protein	-
HUT21_RS25255 (HUT21_25255)	-	5543835..5544302 (+)	468	WP_026019989.1	hypothetical protein	-
HUT21_RS25260 (HUT21_25260)	-	5544299..5544988 (+)	690	WP_015637070.1	energy-coupling factor ABC transporter permease	-
HUT21_RS25265 (HUT21_25265)	-	5545052..5545267 (+)	216	WP_011063525.1	hypothetical protein	-
HUT21_RS25270 (HUT21_25270)	yacG	5545287..5545490 (-)	204	WP_015637069.1	DNA gyrase inhibitor YacG	-
HUT21_RS25275 (HUT21_25275)	coaE	5545487..5546110 (-)	624	WP_011063523.1	dephospho-CoA kinase	-
HUT21_RS25280 (HUT21_25280)	pilD	5546107..5546979 (-)	873	WP_015637068.1	prepilin peptidase	Machinery gene
HUT21_RS25285 (HUT21_25285)	pilC	5546982..5548199 (-)	1218	WP_015637067.1	type II secretion system F family protein	Machinery gene
HUT21_RS25290 (HUT21_25290)	-	5548529..5548945 (+)	417	WP_011063520.1	pilin	-
HUT21_RS25295 (HUT21_25295)	-	5549174..5549530 (+)	357	WP_011063519.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32227.45 Da
• Isoelectric Point: 7.2993

>NTDB_id=455149 HUT21_RS25280 WP_015637068.1 5546107..5546979(-) (pilD) [Pseudomonas protegens strain PGNR2]
MPLTDALTLYPMAFVAAALVLGLIVGSFLNVLVWRLPKMLERDWRAQARDVLGLEPEPVTAPYNLMLPRSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSSISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=455149 HUT21_RS25280 WP_015637068.1 5546107..5546979(-) (pilD) [Pseudomonas protegens strain PGNR2]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCATTCGTGGCTGCGGCCCTGGTATTGGGCCTGATCGTCGGCAG
CTTTCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTGCTGGGGC
TGGAGCCGGAACCAGTGACTGCGCCCTATAACCTGATGCTGCCGCGCTCCCAGTGCCCGCACTGTGCGCAGGCAATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGCGTGGCCGCTGCGCCCACTGCAATAGCTCCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCTTGCGGGCTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGTTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAGTTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGTTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTACCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCCTGCTGCTGTCATCCCTGTTGGGG
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.093	96.897	0.524
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	51.282	94.138	0.483
pilD	Acinetobacter nosocomialis M2	51.282	94.138	0.483
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438