Detailed information NTG0455148

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HUT21_RS25175
• Genome accession: NZ_CP054873
• Coordinates: 5529434..5530768 (-)
• Length: 444 a.a.
• NCBI ID: WP_041752595.1
• Uniprot ID: A0A9Q7R678
• Organism: Pseudomonas protegens strain PGNR2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5524434..5535768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT21_RS25160 (HUT21_25160)	-	5524804..5527866 (+)	3063	WP_015637085.1	pilus assembly protein	-
HUT21_RS25165 (HUT21_25165)	-	5527882..5528283 (+)	402	WP_015637084.1	type IV pilin protein	-
HUT21_RS25170 (HUT21_25170)	thiO	5528337..5529437 (+)	1101	WP_015637083.1	glycine oxidase ThiO	-
HUT21_RS25175 (HUT21_25175)	pilR	5529434..5530768 (-)	1335	WP_041752595.1	sigma-54-dependent transcriptional regulator	Regulator
HUT21_RS25180 (HUT21_25180)	-	5531194..5531427 (-)	234	WP_015637081.1	PP0621 family protein	-
HUT21_RS25185 (HUT21_25185)	-	5531552..5532577 (-)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
HUT21_RS25190 (HUT21_25190)	rluD	5532728..5533690 (+)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HUT21_RS25195 (HUT21_25195)	pgeF	5533687..5534412 (+)	726	WP_015637079.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.50 Da
• Isoelectric Point: 8.6800

>NTDB_id=455148 HUT21_RS25175 WP_041752595.1 5529434..5530768(-) (pilR) [Pseudomonas protegens strain PGNR2]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=455148 HUT21_RS25175 WP_041752595.1 5529434..5530768(-) (pilR) [Pseudomonas protegens strain PGNR2]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTAGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365