Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HUT23_RS29535 Genome accession   NZ_CP054871
Coordinates   6512656..6513060 (-) Length   134 a.a.
NCBI ID   WP_011064001.1    Uniprot ID   Q4K4E8
Organism   Pseudomonas protegens strain PPRAR07     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6507656..6518060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT23_RS29520 (HUT23_29520) - 6509479..6511542 (-) 2064 WP_011063998.1 methyl-accepting chemotaxis protein -
  HUT23_RS29525 (HUT23_29525) - 6511683..6512222 (-) 540 WP_210483035.1 chemotaxis protein CheW -
  HUT23_RS29530 (HUT23_29530) pilH 6512233..6512598 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  HUT23_RS29535 (HUT23_29535) pilG 6512656..6513060 (-) 405 WP_011064001.1 twitching motility response regulator PilG Regulator
  HUT23_RS29540 (HUT23_29540) gshB 6513297..6514250 (+) 954 WP_011064002.1 glutathione synthase -
  HUT23_RS29545 (HUT23_29545) - 6514350..6515249 (+) 900 WP_210483033.1 energy transducer TonB -
  HUT23_RS29550 (HUT23_29550) - 6515335..6515904 (+) 570 WP_011064004.1 YqgE/AlgH family protein -
  HUT23_RS29555 (HUT23_29555) ruvX 6515904..6516341 (+) 438 WP_011064005.1 Holliday junction resolvase RuvX -
  HUT23_RS29560 (HUT23_29560) pyrR 6516457..6516963 (+) 507 WP_011064006.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HUT23_RS29565 (HUT23_29565) - 6516989..6517993 (+) 1005 WP_011064007.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14743.28 Da        Isoelectric Point: 7.3231

>NTDB_id=455122 HUT23_RS29535 WP_011064001.1 6512656..6513060(-) (pilG) [Pseudomonas protegens strain PPRAR07]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNNSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=455122 HUT23_RS29535 WP_011064001.1 6512656..6513060(-) (pilG) [Pseudomonas protegens strain PPRAR07]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGTTGCGAGGTCATCACCGCAGTGGACGGCTTCGAAGCCCTGTCGAAGATCGTCGACCATCACCCCGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGACGGCTATCAGACCTGTGCGCTGGTGAAGAACAACAGCGCGTTCAAG
TCCATCCCGGTAATCATGCTGTCTTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCCATGTCCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4K4E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

44.444

87.313

0.388