Detailed information NTG0455117

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUT23_RS26825
• Genome accession: NZ_CP054871
• Coordinates: 5941091..5941963 (+)
• Length: 290 a.a.
• NCBI ID: WP_210483197.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain PPRAR07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5936091..5946963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT23_RS26810 (HUT23_26810)	-	5938540..5938896 (-)	357	WP_011063519.1	BON domain-containing protein	-
HUT23_RS26815 (HUT23_26815)	-	5939125..5939541 (-)	417	WP_077934790.1	pilin	-
HUT23_RS26820 (HUT23_26820)	pilC	5939871..5941088 (+)	1218	WP_015637067.1	type II secretion system F family protein	Machinery gene
HUT23_RS26825 (HUT23_26825)	pilD	5941091..5941963 (+)	873	WP_210483197.1	A24 family peptidase	Machinery gene
HUT23_RS26830 (HUT23_26830)	coaE	5941960..5942583 (+)	624	WP_011063523.1	dephospho-CoA kinase	-
HUT23_RS26835 (HUT23_26835)	yacG	5942580..5942783 (+)	204	WP_011063524.1	DNA gyrase inhibitor YacG	-
HUT23_RS26840 (HUT23_26840)	-	5942803..5943018 (-)	216	WP_011063525.1	hypothetical protein	-
HUT23_RS26845 (HUT23_26845)	-	5943082..5943771 (-)	690	WP_053153931.1	energy-coupling factor ABC transporter permease	-
HUT23_RS26850 (HUT23_26850)	-	5943768..5944235 (-)	468	WP_026019989.1	hypothetical protein	-
HUT23_RS26855 (HUT23_26855)	-	5944379..5945008 (+)	630	WP_011063528.1	DUF1780 domain-containing protein	-
HUT23_RS26860 (HUT23_26860)	-	5945198..5945371 (+)	174	WP_015637073.1	DUF3094 family protein	-
HUT23_RS26865 (HUT23_26865)	-	5945432..5946730 (+)	1299	WP_125063615.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32244.45 Da
• Isoelectric Point: 7.0180

>NTDB_id=455117 HUT23_RS26825 WP_210483197.1 5941091..5941963(+) (pilD) [Pseudomonas protegens strain PPRAR07]
MPLTDALTLYPMAFVAAALVFGLIVGSFLNMLVWRLPKMLERDWRAQARDVLGLEPEPVAAPYNLMLPHSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSSISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=455117 HUT23_RS26825 WP_210483197.1 5941091..5941963(+) (pilD) [Pseudomonas protegens strain PPRAR07]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCCTTCGTGGCTGCGGCCCTGGTATTTGGCCTGATCGTCGGCAG
CTTTCTCAACATGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTACTGGGGC
TGGAGCCGGAACCTGTGGCTGCGCCCTACAACCTGATGCTGCCGCACTCCCAGTGCCCGCACTGTGCGCAGGCGATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTACGTGGCCGCTGCGCCCACTGCAATAGCTCCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCCTGCGGGCTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGCTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAGCTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGCTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTACCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCCTGCTGCTGTCATCCCTGTTGGGG
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.122	96.207	0.521
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Acinetobacter baumannii D1279779	50.916	94.138	0.479
pilD	Acinetobacter nosocomialis M2	50.916	94.138	0.479
pilD	Neisseria gonorrhoeae MS11	46.296	93.103	0.431