Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HUT23_RS09395 Genome accession   NZ_CP054871
Coordinates   2065709..2066344 (+) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens strain PPRAR07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2060709..2071344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT23_RS09375 (HUT23_09385) - 2060958..2061890 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  HUT23_RS09380 (HUT23_09390) - 2061887..2062666 (+) 780 WP_011060097.1 ABC transporter permease -
  HUT23_RS09385 (HUT23_09395) - 2062720..2063235 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  HUT23_RS09390 (HUT23_09400) comA 2063375..2065606 (+) 2232 WP_210482462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUT23_RS09395 (HUT23_09405) exbB 2065709..2066344 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HUT23_RS09400 (HUT23_09410) - 2066341..2066769 (+) 429 WP_011060101.1 biopolymer transporter ExbD -
  HUT23_RS09405 (HUT23_09415) lpxK 2066769..2067779 (+) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  HUT23_RS09410 (HUT23_09420) - 2067804..2067989 (+) 186 WP_011060103.1 Trm112 family protein -
  HUT23_RS09415 (HUT23_09425) kdsB 2067986..2068750 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUT23_RS09420 (HUT23_09430) - 2068750..2069214 (+) 465 WP_015634698.1 low molecular weight protein-tyrosine-phosphatase -
  HUT23_RS09425 (HUT23_09435) murB 2069211..2070230 (+) 1020 WP_210482461.1 UDP-N-acetylmuramate dehydrogenase -
  HUT23_RS09430 (HUT23_09440) - 2070473..2070943 (+) 471 WP_011060107.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=455109 HUT23_RS09395 WP_011060100.1 2065709..2066344(+) (exbB) [Pseudomonas protegens strain PPRAR07]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=455109 HUT23_RS09395 WP_011060100.1 2065709..2066344(+) (exbB) [Pseudomonas protegens strain PPRAR07]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTCACCCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAGCTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877