Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HUT23_RS09390 Genome accession   NZ_CP054871
Coordinates   2063375..2065606 (+) Length   743 a.a.
NCBI ID   WP_210482462.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PPRAR07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2058375..2070606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT23_RS09365 (HUT23_09375) - 2059500..2060159 (+) 660 WP_011060094.1 transglutaminase family protein -
  HUT23_RS09370 (HUT23_09380) - 2060202..2060825 (+) 624 WP_011060095.1 glutathione S-transferase -
  HUT23_RS09375 (HUT23_09385) - 2060958..2061890 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  HUT23_RS09380 (HUT23_09390) - 2061887..2062666 (+) 780 WP_011060097.1 ABC transporter permease -
  HUT23_RS09385 (HUT23_09395) - 2062720..2063235 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  HUT23_RS09390 (HUT23_09400) comA 2063375..2065606 (+) 2232 WP_210482462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUT23_RS09395 (HUT23_09405) exbB 2065709..2066344 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HUT23_RS09400 (HUT23_09410) - 2066341..2066769 (+) 429 WP_011060101.1 biopolymer transporter ExbD -
  HUT23_RS09405 (HUT23_09415) lpxK 2066769..2067779 (+) 1011 WP_015634697.1 tetraacyldisaccharide 4'-kinase -
  HUT23_RS09410 (HUT23_09420) - 2067804..2067989 (+) 186 WP_011060103.1 Trm112 family protein -
  HUT23_RS09415 (HUT23_09425) kdsB 2067986..2068750 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUT23_RS09420 (HUT23_09430) - 2068750..2069214 (+) 465 WP_015634698.1 low molecular weight protein-tyrosine-phosphatase -
  HUT23_RS09425 (HUT23_09435) murB 2069211..2070230 (+) 1020 WP_210482461.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81270.63 Da        Isoelectric Point: 10.7210

>NTDB_id=455108 HUT23_RS09390 WP_210482462.1 2063375..2065606(+) (comA) [Pseudomonas protegens strain PPRAR07]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPEHLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
AGLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=455108 HUT23_RS09390 WP_210482462.1 2063375..2065606(+) (comA) [Pseudomonas protegens strain PPRAR07]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGCCTCGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCACAGGCCTGGCGGCAAGGCTTGCGCCAACGCTTGCTAGAGGTCGA
GGCTCAGGGACGCGGTGCGGGGCTGGCGGCGCTGGTAATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCACTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTAGCCGAGCCGCTG
GCCGGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTGCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGGACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCTTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCCCCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGTCATCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCCTTCGGAGCGGCGCATGGGCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.296

96.501

0.62