NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HUT26_RS20580	Genome accession	NZ_CP054868
Coordinates	4509366..4510238 (-)	Length	290 a.a.
NCBI ID	WP_063433051.1	Uniprot ID	A0AAX3FYP7
Organism	Pseudomonas chlororaphis strain PCLAR04
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4504366..4515238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT26_RS20550 (HUT26_20555)	-	4505215..4506651 (-)	1437	WP_063433055.1	undecaprenyl-phosphate glucose phosphotransferase	-
HUT26_RS20555 (HUT26_20560)	-	4507107..4507574 (+)	468	WP_063433054.1	hypothetical protein	-
HUT26_RS20560 (HUT26_20565)	-	4507571..4508260 (+)	690	WP_063433053.1	energy-coupling factor ABC transporter permease	-
HUT26_RS20565 (HUT26_20570)	-	4508326..4508541 (+)	216	WP_025807496.1	hypothetical protein	-
HUT26_RS20570 (HUT26_20575)	yacG	4508546..4508749 (-)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
HUT26_RS20575 (HUT26_20580)	coaE	4508746..4509369 (-)	624	WP_063433052.1	dephospho-CoA kinase	-
HUT26_RS20580 (HUT26_20585)	pilD	4509366..4510238 (-)	873	WP_063433051.1	A24 family peptidase	Machinery gene
HUT26_RS20585 (HUT26_20590)	pilC	4510241..4511458 (-)	1218	WP_124303621.1	type II secretion system F family protein	Machinery gene
HUT26_RS20590 (HUT26_20595)	-	4511822..4512238 (+)	417	WP_063433049.1	pilin	-
HUT26_RS20595 (HUT26_20600)	-	4512527..4512883 (+)	357	WP_025807489.1	BON domain-containing protein	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32068.19 Da Isoelectric Point: 7.9950

                                >NTDB_id=455098 HUT26_RS20580 WP_063433051.1 4509366..4510238(-) (pilD) [Pseudomonas chlororaphis strain PCLAR04]

MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR

PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV

LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG

ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

Download Length: 873 bp

                                >NTDB_id=455098 HUT26_RS20580 WP_063433051.1 4509366..4510238(-) (pilD) [Pseudomonas chlororaphis strain PCLAR04]

ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG

CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC

TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC

CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG

CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT

TGATGCTGTTCCTGAGCTGGGGTCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTA

CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAACGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGTGCCGT

GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT

TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG

GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT

TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448

Detailed information NTG0455098