Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HUT26_RS18025 Genome accession   NZ_CP054868
Coordinates   3957198..3957605 (+) Length   135 a.a.
NCBI ID   WP_016704855.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain PCLAR04     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952198..3962605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT26_RS17995 (HUT26_18000) - 3952243..3953247 (-) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -
  HUT26_RS18000 (HUT26_18005) pyrR 3953274..3953780 (-) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HUT26_RS18005 (HUT26_18010) ruvX 3953902..3954339 (-) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  HUT26_RS18010 (HUT26_18015) - 3954339..3954908 (-) 570 WP_063433301.1 YqgE/AlgH family protein -
  HUT26_RS18015 (HUT26_18020) - 3954985..3955884 (-) 900 WP_025807189.1 energy transducer TonB -
  HUT26_RS18020 (HUT26_18025) gshB 3956005..3956961 (-) 957 WP_063433300.1 glutathione synthase -
  HUT26_RS18025 (HUT26_18030) pilG 3957198..3957605 (+) 408 WP_016704855.1 twitching motility response regulator PilG Regulator
  HUT26_RS18030 (HUT26_18035) pilH 3957649..3958014 (+) 366 WP_007953328.1 twitching motility response regulator PilH -
  HUT26_RS18035 (HUT26_18040) - 3958026..3958565 (+) 540 WP_025807193.1 chemotaxis protein CheW -
  HUT26_RS18040 (HUT26_18045) - 3958690..3960726 (+) 2037 WP_227746013.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14762.13 Da        Isoelectric Point: 6.8624

>NTDB_id=455092 HUT26_RS18025 WP_016704855.1 3957198..3957605(+) (pilG) [Pseudomonas chlororaphis strain PCLAR04]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADHHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=455092 HUT26_RS18025 WP_016704855.1 3957198..3957605(+) (pilG) [Pseudomonas chlororaphis strain PCLAR04]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGTTGCT
GAAGAATGTGGGTTGTGAAGTCATTACCGCGGTCGACGGTTTCGAGGCGCTGGCCAAGATCGCCGACCACCACCCGGACA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.6

92.593

0.719
  vicR Streptococcus mutans UA159

42.063

93.333

0.393