NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	HUT27_RS25610	Genome accession	NZ_CP054867
Coordinates	5741705..5743072 (-)	Length	455 a.a.
NCBI ID	WP_009050968.1	Uniprot ID	A0AB33WWE9
Organism	Pseudomonas chlororaphis strain PCLRT02
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5736705..5748072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT27_RS25585 (HUT27_25585)	-	5737543..5737740 (-)	198	WP_007930039.1	YbdD/YjiX family protein	-
HUT27_RS25590 (HUT27_25590)	-	5737756..5739822 (-)	2067	WP_009045728.1	carbon starvation CstA family protein	-
HUT27_RS25595 (HUT27_25595)	-	5740033..5740494 (+)	462	WP_028683433.1	isoprenylcysteine carboxylmethyltransferase family protein	-
HUT27_RS25600 (HUT27_25600)	-	5740553..5740921 (+)	369	WP_028683432.1	PilZ domain-containing protein	-
HUT27_RS25605 (HUT27_25605)	-	5740947..5741675 (-)	729	WP_041987325.1	hypothetical protein	-
HUT27_RS25610 (HUT27_25610)	radA	5741705..5743072 (-)	1368	WP_009050968.1	DNA repair protein RadA	Machinery gene
HUT27_RS25615 (HUT27_25615)	-	5743118..5743666 (-)	549	WP_210532648.1	ankyrin repeat domain-containing protein	-
HUT27_RS25620 (HUT27_25620)	katB	5743854..5745395 (-)	1542	WP_016703707.1	catalase KatB	-
HUT27_RS25625 (HUT27_25625)	mscL	5745681..5746085 (+)	405	WP_016703708.1	large-conductance mechanosensitive channel protein MscL	-
HUT27_RS25630 (HUT27_25630)	-	5746139..5746915 (-)	777	WP_210532649.1	ferredoxin--NADP reductase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48840.31 Da Isoelectric Point: 7.1317

                                >NTDB_id=455069 HUT27_RS25610 WP_009050968.1 5741705..5743072(-) (radA) [Pseudomonas chlororaphis strain PCLRT02]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=455069 HUT27_RS25610 WP_009050968.1 5741705..5743072(-) (radA) [Pseudomonas chlororaphis strain PCLRT02]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG

CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG

GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG

GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT

TCTGTTACAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACAGGCGAAGAATCGCAGCAACAGGTGG

CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC

ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC

CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG

TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA

GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG

CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA

GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC

AATCCGCGACGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT

TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC

GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA

GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT

TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.796	100	0.49
radA	Streptococcus mitis SK321	46.053	100	0.462
radA	Streptococcus mitis NCTC 12261	45.833	100	0.459
radA	Streptococcus pneumoniae Rx1	45.833	100	0.459
radA	Streptococcus pneumoniae D39	45.833	100	0.459
radA	Streptococcus pneumoniae R6	45.833	100	0.459
radA	Streptococcus pneumoniae TIGR4	45.833	100	0.459

Detailed information NTG0455069