Detailed information NTG0455043

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HUT29_RS26725
• Genome accession: NZ_CP054865
• Coordinates: 6018625..6019953 (+)
• Length: 442 a.a.
• NCBI ID: WP_124303645.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain PCLSL01
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6013625..6024953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT29_RS26705 (HUT29_26720)	pgeF	6015123..6015848 (-)	726	WP_124303641.1	peptidoglycan editing factor PgeF	-
HUT29_RS26710 (HUT29_26725)	rluD	6015845..6016807 (-)	963	WP_025807530.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HUT29_RS26715 (HUT29_26730)	-	6016960..6017982 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
HUT29_RS26720 (HUT29_26735)	-	6018117..6018350 (+)	234	WP_124303643.1	PP0621 family protein	-
HUT29_RS26725 (HUT29_26740)	pilR	6018625..6019953 (+)	1329	WP_124303645.1	sigma-54 dependent transcriptional regulator	Regulator
HUT29_RS26730 (HUT29_26745)	thiO	6019950..6021050 (-)	1101	WP_063433073.1	glycine oxidase ThiO	-
HUT29_RS26735 (HUT29_26750)	-	6021105..6021506 (-)	402	WP_009050937.1	type IV pilin protein	-
HUT29_RS26740 (HUT29_26755)	-	6021520..6024588 (-)	3069	WP_124373536.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48888.25 Da
• Isoelectric Point: 8.9622

>NTDB_id=455043 HUT29_RS26725 WP_124303645.1 6018625..6019953(+) (pilR) [Pseudomonas chlororaphis strain PCLSL01]
MSPRQKVLIVDDDPGVREYLEISLGRMQRHTRSARTLGEARHWLARESFDLCLSDLHLPDGTGLELLEHIQRRRLRMPLA
ILSACARQETAVQALKAGAIDFLSKPVALARLRELLNSALPGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGPRANRAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLATAILE
RLAQGDGQPLARLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTSHSAHPAIAPGAAQVIDLEDHLQ
EIERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=455043 HUT29_RS26725 WP_124303645.1 6018625..6019953(+) (pilR) [Pseudomonas chlororaphis strain PCLSL01]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCGTTCGCGAATATCTGGAAATCAGCCTTGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGTACCTTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAAGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGACTGGAATTACTCGAGCATATCCAGCGCCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGTGCCTGCGCCCGCCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGTGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCCCGGATCGACACCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGGCCACGGGCCAACCGCGCCTTCGTGCC
GGTCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCACACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAAGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCATTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGACGACATCGAACCCTTGGCCACAGCCATCCTCGAG
CGGCTGGCGCAGGGCGACGGCCAACCGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCCATACCCTGTGCGAGAACCGCCGGATCGAAGCGCGCGATC
TGCGCCTGACGTCACACAGCGCCCATCCGGCCATCGCGCCCGGAGCGGCCCAGGTGATCGACCTTGAAGACCATCTGCAA
GAAATCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGTTTGAGTCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.778	100	0.69
pilR	Acinetobacter baumannii strain A118	44.444	100	0.462