NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HUT29_RS26530	Genome accession	NZ_CP054865
Coordinates	5968149..5969021 (+)	Length	290 a.a.
NCBI ID	WP_063433051.1	Uniprot ID	A0AAX3FYP7
Organism	Pseudomonas chlororaphis strain PCLSL01
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5963149..5974021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT29_RS26515 (HUT29_26530)	-	5965504..5965860 (-)	357	WP_025807489.1	BON domain-containing protein	-
HUT29_RS26520 (HUT29_26535)	-	5966149..5966565 (-)	417	WP_063433049.1	pilin	-
HUT29_RS26525 (HUT29_26540)	pilC	5966929..5968146 (+)	1218	WP_124303621.1	type II secretion system F family protein	Machinery gene
HUT29_RS26530 (HUT29_26545)	pilD	5968149..5969021 (+)	873	WP_063433051.1	A24 family peptidase	Machinery gene
HUT29_RS26535 (HUT29_26550)	coaE	5969018..5969641 (+)	624	WP_063433052.1	dephospho-CoA kinase	-
HUT29_RS26540 (HUT29_26555)	yacG	5969638..5969841 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
HUT29_RS26545 (HUT29_26560)	-	5969846..5970061 (-)	216	WP_025807496.1	hypothetical protein	-
HUT29_RS26550 (HUT29_26565)	-	5970127..5970816 (-)	690	WP_063433053.1	energy-coupling factor ABC transporter permease	-
HUT29_RS26555 (HUT29_26570)	-	5970813..5971280 (-)	468	WP_063433054.1	hypothetical protein	-
HUT29_RS26560 (HUT29_26575)	-	5971736..5973172 (+)	1437	WP_063433055.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32068.19 Da Isoelectric Point: 7.9950

                                >NTDB_id=455041 HUT29_RS26530 WP_063433051.1 5968149..5969021(+) (pilD) [Pseudomonas chlororaphis strain PCLSL01]

MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR

PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV

LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG

ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

Download Length: 873 bp

                                >NTDB_id=455041 HUT29_RS26530 WP_063433051.1 5968149..5969021(+) (pilD) [Pseudomonas chlororaphis strain PCLSL01]

ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG

CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC

TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC

CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG

CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT

TGATGCTGTTCCTGAGCTGGGGTCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTA

CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAACGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGTGCCGT

GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT

TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG

GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT

TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448

Detailed information NTG0455041