Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   JEQ25_RS08530 Genome accession   NZ_CP066380
Coordinates   1587834..1588859 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain ID-A05     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582834..1593859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS08495 (JEQ25_08430) ylbE 1583134..1583373 (+) 240 WP_046381000.1 YlbE-like family protein -
  JEQ25_RS08500 (JEQ25_08435) ylbF 1583489..1583938 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JEQ25_RS08505 (JEQ25_08440) ylbG 1583993..1584265 (+) 273 WP_015715839.1 YlbG family protein -
  JEQ25_RS08510 (JEQ25_08445) rsmD 1584588..1585142 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JEQ25_RS08515 (JEQ25_08450) coaD 1585147..1585632 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JEQ25_RS08520 (JEQ25_08455) spoVV 1585643..1586869 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  JEQ25_RS08525 (JEQ25_08460) ylbK 1587050..1587832 (+) 783 WP_003232221.1 patatin family protein -
  JEQ25_RS08530 (JEQ25_08465) sepM 1587834..1588859 (+) 1026 WP_003245451.1 protease DdcP Regulator
  JEQ25_RS08535 (JEQ25_08470) ylbM 1588876..1590123 (-) 1248 WP_046381001.1 nucleotidyltransferase -
  JEQ25_RS08540 (JEQ25_08475) - 1590120..1590305 (-) 186 WP_003232215.1 hypothetical protein -
  JEQ25_RS08545 (JEQ25_08480) ylbN 1590333..1590851 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  JEQ25_RS08550 (JEQ25_08485) rpmF 1590873..1591052 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  JEQ25_RS08555 (JEQ25_08490) gerR 1591198..1591779 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  JEQ25_RS08560 (JEQ25_08495) ylbP 1591836..1592318 (-) 483 WP_014476736.1 N-acetyltransferase -
  JEQ25_RS08565 (JEQ25_08500) - 1592478..1593374 (+) 897 WP_046381002.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=454864 JEQ25_RS08530 WP_003245451.1 1587834..1588859(+) (sepM) [Bacillus subtilis strain ID-A05]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=454864 JEQ25_RS08530 WP_003245451.1 1587834..1588859(+) (sepM) [Bacillus subtilis strain ID-A05]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402