Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   JEQ25_RS08500 Genome accession   NZ_CP066380
Coordinates   1583489..1583938 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ID-A05     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578489..1588938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS08460 (JEQ25_08395) ctaE 1578505..1579128 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  JEQ25_RS08465 (JEQ25_08400) ctaF 1579131..1579463 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  JEQ25_RS08470 (JEQ25_08405) ctaG 1579491..1580384 (+) 894 WP_046380999.1 cytochrome c oxidase assembly factor CtaG -
  JEQ25_RS08475 (JEQ25_08410) ylbA 1580416..1580778 (-) 363 WP_003232238.1 YugN family protein -
  JEQ25_RS08480 (JEQ25_08415) ylbB 1580918..1581364 (+) 447 WP_003221362.1 CBS domain-containing protein -
  JEQ25_RS08485 (JEQ25_08420) ylbC 1581448..1582488 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  JEQ25_RS08490 (JEQ25_08425) ylbD 1582720..1583118 (+) 399 WP_003232233.1 YlbD family protein -
  JEQ25_RS08495 (JEQ25_08430) ylbE 1583134..1583373 (+) 240 WP_046381000.1 YlbE-like family protein -
  JEQ25_RS08500 (JEQ25_08435) ylbF 1583489..1583938 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JEQ25_RS08505 (JEQ25_08440) ylbG 1583993..1584265 (+) 273 WP_015715839.1 YlbG family protein -
  JEQ25_RS08510 (JEQ25_08445) rsmD 1584588..1585142 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JEQ25_RS08515 (JEQ25_08450) coaD 1585147..1585632 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JEQ25_RS08520 (JEQ25_08455) spoVV 1585643..1586869 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  JEQ25_RS08525 (JEQ25_08460) ylbK 1587050..1587832 (+) 783 WP_003232221.1 patatin family protein -
  JEQ25_RS08530 (JEQ25_08465) sepM 1587834..1588859 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=454863 JEQ25_RS08500 WP_003221370.1 1583489..1583938(+) (ylbF) [Bacillus subtilis strain ID-A05]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=454863 JEQ25_RS08500 WP_003221370.1 1583489..1583938(+) (ylbF) [Bacillus subtilis strain ID-A05]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATTAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1