Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | HUK68_RS02480 | Genome accession | NZ_CP054840 |
| Coordinates | 527634..529103 (-) | Length | 489 a.a. |
| NCBI ID | WP_175502788.1 | Uniprot ID | A0A6N1WYY8 |
| Organism | Comamonas antarctica strain 16-35-5 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 522634..534103
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUK68_RS02470 (HUK68_02470) | - | 523737..526667 (-) | 2931 | WP_175502786.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| HUK68_RS02475 (HUK68_02475) | ampD | 527036..527668 (-) | 633 | WP_175502787.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| HUK68_RS02480 (HUK68_02480) | pilR | 527634..529103 (-) | 1470 | WP_175502788.1 | sigma-54 dependent transcriptional regulator | Regulator |
| HUK68_RS02485 (HUK68_02485) | - | 529113..530831 (-) | 1719 | WP_175502789.1 | ATP-binding protein | - |
| HUK68_RS02490 (HUK68_02490) | - | 530852..531100 (-) | 249 | WP_175502790.1 | PP0621 family protein | - |
| HUK68_RS02495 (HUK68_02495) | ccsA | 531097..531882 (-) | 786 | WP_244146233.1 | cytochrome c biogenesis protein CcsA | - |
| HUK68_RS02500 (HUK68_02500) | ffh | 532165..533556 (+) | 1392 | WP_175502792.1 | signal recognition particle protein | - |
Sequence
Protein
Download Length: 489 a.a. Molecular weight: 52789.13 Da Isoelectric Point: 6.0377
>NTDB_id=454837 HUK68_RS02480 WP_175502788.1 527634..529103(-) (pilR) [Comamonas antarctica strain 16-35-5]
MPDIAASILVIDDEPDLRTLYELTLLREGYRVETADSVQEARAQLQAQRFDAVLTDMRLPDGLGLDLLLELRAQQRSERC
VVITAHSSAENAVEALRAGAFDYLSKPVDLKQFRAVVASAVHRPATGGSSAARGTRAPAAGGRESEPRLADPAGALALLV
GESPAMRAVKQNILKVAKGMAPVLVQGESGTGKELVARALHASSHRADGPLVAVNCGAIPDNLLEAEFFGARKGSYTGAT
QDRGGYFQAARGGTLFLDEIGDLPLAMQAKLLRAIQERRVRPLGSTQEETVDVRIISATHRDLAAEVAAGRFRQDLYYRL
NVIEIRLPPLRERREDLPALCEVLLARIAAETGCPVPPVTPQLLEQLARLPLTGNVRELENQLHRALTLSEDQQLSLGAA
ADETLAPVPVPATAAAPLAADAGHLPHDLQAWLDQQERDILVRALREMGFNRTAAAARLGISLRQIRYRIARLNISAPHD
SEAPDSPEH
MPDIAASILVIDDEPDLRTLYELTLLREGYRVETADSVQEARAQLQAQRFDAVLTDMRLPDGLGLDLLLELRAQQRSERC
VVITAHSSAENAVEALRAGAFDYLSKPVDLKQFRAVVASAVHRPATGGSSAARGTRAPAAGGRESEPRLADPAGALALLV
GESPAMRAVKQNILKVAKGMAPVLVQGESGTGKELVARALHASSHRADGPLVAVNCGAIPDNLLEAEFFGARKGSYTGAT
QDRGGYFQAARGGTLFLDEIGDLPLAMQAKLLRAIQERRVRPLGSTQEETVDVRIISATHRDLAAEVAAGRFRQDLYYRL
NVIEIRLPPLRERREDLPALCEVLLARIAAETGCPVPPVTPQLLEQLARLPLTGNVRELENQLHRALTLSEDQQLSLGAA
ADETLAPVPVPATAAAPLAADAGHLPHDLQAWLDQQERDILVRALREMGFNRTAAAARLGISLRQIRYRIARLNISAPHD
SEAPDSPEH
Nucleotide
Download Length: 1470 bp
>NTDB_id=454837 HUK68_RS02480 WP_175502788.1 527634..529103(-) (pilR) [Comamonas antarctica strain 16-35-5]
ATGCCTGACATTGCCGCCTCCATCCTGGTCATCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTGACGCTGCTGCG
CGAAGGCTACCGCGTCGAGACCGCCGACAGCGTACAGGAGGCGCGCGCCCAGCTGCAGGCCCAGCGCTTCGACGCCGTGC
TCACCGACATGCGCCTGCCCGACGGCCTGGGCCTGGACCTGCTGCTGGAGCTGCGCGCGCAGCAGCGCTCCGAGCGCTGC
GTGGTCATCACCGCGCACAGCTCGGCCGAGAATGCGGTCGAGGCGCTGCGCGCGGGCGCCTTCGACTACCTGAGCAAACC
CGTGGACCTCAAGCAGTTCCGCGCCGTCGTCGCCTCGGCCGTGCATCGGCCCGCGACCGGCGGTTCGTCCGCGGCGCGTG
GCACGCGCGCCCCGGCCGCGGGCGGGCGCGAGTCCGAGCCGCGCCTGGCCGATCCGGCCGGCGCGCTGGCACTGCTGGTG
GGCGAATCGCCGGCCATGCGCGCGGTCAAGCAGAACATTCTCAAGGTCGCCAAAGGCATGGCGCCAGTGCTGGTGCAGGG
CGAATCGGGCACCGGCAAGGAACTGGTGGCGCGCGCGCTGCATGCCAGCAGCCACCGCGCCGACGGCCCGCTGGTGGCGG
TGAACTGCGGCGCGATTCCCGACAACCTGCTCGAGGCCGAGTTCTTCGGCGCGCGCAAGGGCTCGTACACCGGCGCCACG
CAGGATCGCGGCGGCTATTTCCAGGCCGCGCGCGGCGGCACGCTGTTTCTCGACGAGATCGGCGACCTGCCGCTCGCCAT
GCAGGCCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCCCGCTGGGCTCGACCCAGGAGGAGACGGTCGATGTGC
GCATCATCAGCGCCACGCACCGCGACCTGGCCGCCGAAGTCGCCGCGGGGCGCTTCCGCCAGGATCTCTATTACCGGCTC
AACGTCATCGAGATCCGGCTGCCGCCGCTGCGCGAACGCCGCGAGGACCTGCCGGCGCTGTGCGAAGTGCTGCTGGCGCG
CATTGCCGCCGAAACCGGCTGCCCGGTGCCGCCGGTCACCCCGCAGCTGCTCGAGCAGCTCGCACGCCTGCCGCTCACCG
GCAACGTGCGTGAACTTGAAAACCAGCTGCACCGCGCGCTCACGCTCAGCGAAGACCAGCAGCTGTCGCTCGGCGCGGCC
GCCGATGAAACGCTGGCGCCCGTGCCCGTGCCAGCTACCGCCGCCGCGCCCCTTGCCGCGGACGCCGGCCACCTGCCGCA
TGACCTGCAGGCCTGGCTCGACCAGCAGGAGCGCGACATCCTGGTGCGCGCACTGCGGGAAATGGGCTTCAACCGCACCG
CCGCCGCGGCGCGGCTGGGCATCAGCCTGCGCCAGATCCGCTACCGCATTGCCCGCCTGAACATCTCCGCCCCCCATGAC
AGCGAAGCCCCCGACAGCCCCGAACACTGA
ATGCCTGACATTGCCGCCTCCATCCTGGTCATCGACGACGAGCCCGACCTGCGCACGCTCTACGAGCTGACGCTGCTGCG
CGAAGGCTACCGCGTCGAGACCGCCGACAGCGTACAGGAGGCGCGCGCCCAGCTGCAGGCCCAGCGCTTCGACGCCGTGC
TCACCGACATGCGCCTGCCCGACGGCCTGGGCCTGGACCTGCTGCTGGAGCTGCGCGCGCAGCAGCGCTCCGAGCGCTGC
GTGGTCATCACCGCGCACAGCTCGGCCGAGAATGCGGTCGAGGCGCTGCGCGCGGGCGCCTTCGACTACCTGAGCAAACC
CGTGGACCTCAAGCAGTTCCGCGCCGTCGTCGCCTCGGCCGTGCATCGGCCCGCGACCGGCGGTTCGTCCGCGGCGCGTG
GCACGCGCGCCCCGGCCGCGGGCGGGCGCGAGTCCGAGCCGCGCCTGGCCGATCCGGCCGGCGCGCTGGCACTGCTGGTG
GGCGAATCGCCGGCCATGCGCGCGGTCAAGCAGAACATTCTCAAGGTCGCCAAAGGCATGGCGCCAGTGCTGGTGCAGGG
CGAATCGGGCACCGGCAAGGAACTGGTGGCGCGCGCGCTGCATGCCAGCAGCCACCGCGCCGACGGCCCGCTGGTGGCGG
TGAACTGCGGCGCGATTCCCGACAACCTGCTCGAGGCCGAGTTCTTCGGCGCGCGCAAGGGCTCGTACACCGGCGCCACG
CAGGATCGCGGCGGCTATTTCCAGGCCGCGCGCGGCGGCACGCTGTTTCTCGACGAGATCGGCGACCTGCCGCTCGCCAT
GCAGGCCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCCCGCTGGGCTCGACCCAGGAGGAGACGGTCGATGTGC
GCATCATCAGCGCCACGCACCGCGACCTGGCCGCCGAAGTCGCCGCGGGGCGCTTCCGCCAGGATCTCTATTACCGGCTC
AACGTCATCGAGATCCGGCTGCCGCCGCTGCGCGAACGCCGCGAGGACCTGCCGGCGCTGTGCGAAGTGCTGCTGGCGCG
CATTGCCGCCGAAACCGGCTGCCCGGTGCCGCCGGTCACCCCGCAGCTGCTCGAGCAGCTCGCACGCCTGCCGCTCACCG
GCAACGTGCGTGAACTTGAAAACCAGCTGCACCGCGCGCTCACGCTCAGCGAAGACCAGCAGCTGTCGCTCGGCGCGGCC
GCCGATGAAACGCTGGCGCCCGTGCCCGTGCCAGCTACCGCCGCCGCGCCCCTTGCCGCGGACGCCGGCCACCTGCCGCA
TGACCTGCAGGCCTGGCTCGACCAGCAGGAGCGCGACATCCTGGTGCGCGCACTGCGGGAAATGGGCTTCAACCGCACCG
CCGCCGCGGCGCGGCTGGGCATCAGCCTGCGCCAGATCCGCTACCGCATTGCCCGCCTGAACATCTCCGCCCCCCATGAC
AGCGAAGCCCCCGACAGCCCCGAACACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
50.321 |
95.501 |
0.481 |
| pilR | Acinetobacter baumannii strain A118 |
40.204 |
100 |
0.403 |