Detailed information NTG0454700

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JEY30_RS29610
• Genome accession: NZ_CP066351
• Coordinates: 6278542..6279813 (-)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain S06B-BJ
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6273542..6284813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JEY30_RS29595 (JEY30_29345)	-	6274537..6274797 (-)	261	WP_038959135.1	hypothetical protein	-
JEY30_RS29600 (JEY30_29350)	-	6275320..6275724 (-)	405	WP_038959134.1	GFA family protein	-
JEY30_RS29605 (JEY30_29355)	lon	6275794..6278217 (-)	2424	WP_014494835.1	endopeptidase La	-
JEY30_RS29610 (JEY30_29360)	clpX	6278542..6279813 (-)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JEY30_RS29615 (JEY30_29365)	clpP	6280275..6280907 (-)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
JEY30_RS29620 (JEY30_29370)	tig	6281211..6282572 (-)	1362	WP_014494832.1	trigger factor	-
JEY30_RS29630 (JEY30_29380)	-	6282985..6284337 (+)	1353	WP_038959133.1	multicopper oxidase domain-containing protein	-
JEY30_RS29635 (JEY30_29385)	-	6284365..6284799 (-)	435	WP_038959132.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=454700 JEY30_RS29610 WP_014494834.1 6278542..6279813(-) (clpX) [Bradyrhizobium japonicum strain S06B-BJ]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=454700 JEY30_RS29610 WP_014494834.1 6278542..6279813(-) (clpX) [Bradyrhizobium japonicum strain S06B-BJ]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGCCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCAACGACGCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTCCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCGATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
CTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGCCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTTGCCCGCAAGGCGATCGAGCGCAAGACTGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGTACGGCCCGTCCGCTCTACATCTACGCCGATCGGTCCGATCGCGCCGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527